CX287339

Overview
NameCX287339
Unique NameCX287339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROME (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila melanogaster GN=eIF3-S5-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEY 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROER (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila erecta GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEY 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.243e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEY 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.243e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEY 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_NEOFI (Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_016300 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPNC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g00880 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   73 GPSSAATSNVTAK----VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            GP +  T+  TA     + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   15 GPVAVGTAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFU (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus GN=AFUA_1G09330 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEY 105          
The following BLAST results are available for this feature:
BLAST of CX287339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EI3F1_DROME4.014e-2046.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROER4.014e-2046.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI5.243e-2046.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR5.243e-2046.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEOFI6.847e-2046.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPNC6.847e-2046.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFU6.847e-2046.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFC6.847e-2046.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPCL6.847e-2046.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO6.847e-2046.08Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01008E01SK Veg1 Citrus clementina cDNA clone C01008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287339 ID=CX287339; Name=CX287339; organism=Citrus clementina; type=EST; length=404bp
TTTGAATCGAGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAG
CGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATG
TAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTAC
GTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTC
CGTTTTGCCCGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTC
ACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACC
ATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATG
GTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAAT
TCTA
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