CX287339

Overview
NameCX287339
Unique NameCX287339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287339_ssr20 microsatellite CX287339_ssr20:20..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10799 contig Ccv1_Contig10799:19..422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.168e-19
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S+  T+ +   + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   21 SAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_COCIM (Eukaryotic translation initiation factor 3 subunit F OS=Coccidioides immitis GN=CIMG_07134 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.602e-19
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   73 GPSSAATSNVTAK----VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            GP++   +  TA     + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR  + V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  F
Sbjct:   15 GPATVGVAPSTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRTCFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N++ KVHP+V+F I D Y RR   + RVIGTL G+    G V++ N + VPH E +DQV  ++ Y   + + + +VN  E IVGW++TG  VT  S++IHE+
Sbjct:    4 NISVKVHPVVLFQIVDAYERRNADSHRVIGTLWGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEY 104          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.907e-18
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   61 VLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            VL FG S+A    +T  + P  +F+I D  VRR D   Q+ RVIG L+G    DG+ V++R+++ +PH E  DQV +D+EY   ML   LK NP+E ++GW++T   +   SALI  F
Sbjct:   19 VLGFGVSNAP---LTVNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNF 133          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_YARLI (Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia lipolytica GN=YALI0E26851g PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ A ++VT     L  F I D  +RR ++  +VIGTL+G    DG+ V++RN+Y VPH+E   ++ +D+EY+ TML  H K  P+EVIVGW++T   +   S LIH++
Sbjct:   13 TNGAPTHVTVTAQAL--FQILDHALRREEEQSKVIGTLVGIRSEDGSEVEVRNAYAVPHSESEQEMTIDLEYNPTMLALHRKAFPKEVIVGWYATSSELNTFSGLIHDY 119          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  112 VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            VHP+ +F+I D Y+RR D   RVIGTLLG+   +  ++I+N + VPH E ++  QV +D+EYH +M +   KV P EVIVGW++T   +   SALI +F
Sbjct:   34 VHPVALFSILDHYLRRNDGQHRVIGTLLGT-RTESEIEIKNCFAVPHLEDAEEGQVQVDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDF 131          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_MAGGR (Eukaryotic translation initiation factor 3 subunit F OS=Magnaporthe grisea GN=MGG_10653 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   82 SAATSNVTAKVHPLVIFNICDCYVRRP---DQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            +A  + +T  + P  I +I D  VRR     QA RVIG L+G    DGT V++R+++ +PH E  DQV +D+EY   ML   LK +P+E ++GW++T   +   SALI  F
Sbjct:   23 NANVAPLTVTIQPQAILSILDHAVRRDIRDTQATRVIGALVGVRSEDGTDVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKASPRESLLGWYTTSHELNSFSALIQNF 133          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_CHAGB (Eukaryotic translation initiation factor 3 subunit F OS=Chaetomium globosum GN=CHGG_00662 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  100 VTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            +T  + P  +F++ D  VRR     Q+ RVIG L+G+   DG+ V++R+++ +PH E  DQV +D+EY   ML   LK +P+E ++GW++T   +   SALI  F
Sbjct:   28 LTVHIQPQAVFSVIDHAVRRDTRDTQSTRVIGALVGTRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKASPRETLLGWYTTSHELNSFSALIQNF 132          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPS (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   82 SAATSNVTAKV--HPLVIFNICDCYVRRPDQAERVIGTLLGSVL-PDGTVDIRNSYVVPHNEFSDQ---VALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S +  N+ +KV  HPLV+F I D Y RR      V+GTLLG+V    G ++I N + V H    D    + LD++Y + ML+      PQE ++GWFSTG  V+  +  +HE+
Sbjct:    2 SLSNFNLQSKVLLHPLVLFQIIDAYERRAKDVPEVLGTLLGTVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEY 114          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   82 SAATSNVTAKV--HPLVIFNICDCYVRRPDQAERVIGTLLGSVL-PDGTVDIRNSYVVPHNEFSDQ---VALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            S +  N+ +KV  HPLV+F I D Y RR      V+GTLLG V    G ++I N + V H    D    + LD++Y + ML+      PQE +VGWFSTG  V+  +  +HE+
Sbjct:    2 SLSNFNLQSKVLLHPLVLFQIIDAYERRAKDVPEVLGTLLGIVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEY 114          
The following BLAST results are available for this feature:
BLAST of CX287339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EIF3F_ASPTN1.168e-1945.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_COCIM2.602e-1946.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO9.887e-1944.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEUCR4.907e-1842.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_YARLI2.435e-1741.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA2.435e-1746.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MAGGR1.336e-1540.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CHAGB1.336e-1539.05Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPS1.477e-1438.94Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPE1.477e-1439.82Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01008E01SK Veg1 Citrus clementina cDNA clone C01008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287339 ID=CX287339; Name=CX287339; organism=Citrus clementina; type=EST; length=404bp
TTTGAATCGAGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAG
CGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATG
TAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTAC
GTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTC
CGTTTTGCCCGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTC
ACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACC
ATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATG
GTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAAT
TCTA
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