CX287339

Overview
NameCX287339
Unique NameCX287339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   97 NVTAKVH--PLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ AKV   PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++
Sbjct:    6 SIRAKVFLKPLVLFQIIDAYDRRPKGDNQVMGTLLGRTKEDH-IEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROME (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila melanogaster GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   97 NVTAKVH--PLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ AKV+  PLV F I D Y RRP    +V+GTLLG    +G ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++
Sbjct:    6 SMRAKVYLKPLVFFQIIDAYDRRPKGDNQVMGTLLGRN-KEGHIEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   97 NVTAKV--HPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+ AKV   PLV+F I D Y RRP  A ++IGTLLG       + I N + V H E  D  ++ LD+ Y + ML+ +    PQE ++GWFSTG  V+  + L+H++
Sbjct:    6 NLQAKVVLQPLVLFQIIDSYERRPKDATQIIGTLLGRS-NGKEITITNCFTVLHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROER (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila erecta GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  112 VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            + PLV+F I D Y RRP    +VIGTLLG    +G  +I N + VPH E  +  ++ LDI Y   +L+ ++   P E ++GWF TG  V+  ++L+H++
Sbjct:   13 IKPLVLFQIIDSYERRPKGDNQVIGTLLGRN-KEGHFEITNCFTVPHKEHPEINRIDLDIAYASEILELNMLTYPNERVLGWFCTGKSVSRSASLLHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROWI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  112 VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPD-GTVDIRNSYVVPHNEF--SDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            + PLV+ +I D Y RRP    +VIGTLLG   P+ G ++I N + + H ++  SD++ +D++Y + M + +    PQE I+GW++TG  V+  +  +HE+
Sbjct:   13 LQPLVLLHIIDAYERRPKDCTQVIGTLLGRNNPESGHLEISNCFTLLHKDYPNSDRIDVDLQYANDMYELNQLTYPQEKIIGWYATGKEVSRSAVNLHEY 112          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  118 PLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++
Sbjct:   15 PLVLFQIIDAYDRRPKGDNQVMGTLLGRNKEDH-IEITNCFTVPHKEHSENKRIDLDMTYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROYA (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila yakuba GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.753e-13
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  112 VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            + PLV+F I D Y RRP    +V+GTLLG    +G  +I N + VPH E  +  ++ LDI Y    L+ ++     E ++GWFSTG  V+  ++L+H++
Sbjct:   13 IKPLVLFQIIDAYERRPKGDNQVMGTLLGRN-KEGHFEITNCFPVPHKEHPEINRIDLDISYASEFLELNMLTYSNERVLGWFSTGKSVSRSASLLHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_CAEEL (Eukaryotic translation initiation factor 3 subunit F OS=Caenorhabditis elegans GN=eif-3.F PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.359e-12
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   94 SNVTAKVHPLVIFNICDCYVRRPDQA------ERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            SN+T  VHP V  N+ D ++RR   +      E+ +GTL+G     G++ + N + +P NE +D + +D +++  M+ +  K +P E  VGWF T   +T    + H++
Sbjct:    3 SNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMG-YYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDY 110          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROGR (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila grimshawi GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLG-SVLPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ PLV+F I   Y  RP  AE  +GTLLG     + T++I NSY+V H        +QV LD +Y   M + +   NPQE IVGW++T   ++  SA +H +
Sbjct:   13 RLQPLVLFQIISAYEHRPKLAEVAVGTLLGLRDRSNDTIEITNSYMVIHKTQQIGEMEQVKLDKQYASEMYELNQINNPQEKIVGWYNTAKSLSRSSAALHAY 115          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROVI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila virilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.863e-12
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ PLV+F I   Y RRP  A+  +GTLLG     +  ++I NSY V H E      +Q  LD +Y   M + +    PQE I+GW+STG  ++  +A +H +
Sbjct:   13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGEMEQFKLDTQYASEMFELNQITYPQEKIIGWYSTGKSLSRSAAALHAY 115          
The following BLAST results are available for this feature:
BLAST of CX287339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EI3F2_DROSE3.291e-1439.62Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROME3.291e-1439.62Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROAN3.291e-1441.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROER7.332e-1439.39Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROWI1.251e-1337.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSI1.251e-1340.21Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROYA4.753e-1338.38Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CAEEL2.359e-1231.19Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROGR5.255e-1238.83Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROVI6.863e-1236.89Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01008E01SK Veg1 Citrus clementina cDNA clone C01008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287339 ID=CX287339; Name=CX287339; organism=Citrus clementina; type=EST; length=404bp
TTTGAATCGAGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAG
CGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATG
TAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTAC
GTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTC
CGTTTTGCCCGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTC
ACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACC
ATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATG
GTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAAT
TCTA
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