CX287339

Overview
NameCX287339
Unique NameCX287339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287339_ssr20 microsatellite CX287339_ssr20:20..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10799 contig Ccv1_Contig10799:19..422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  112 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTG 363
            VHPLV+ +I D Y R   D ++RV+G LLGS    G VD+ NSY VP  E     +   LD  YH +M     ++N +E +VGW+STG
Sbjct:   19 VHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTG 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F2_DROMO (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila mojavensis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++ PLV+F I   Y RRP  A+  +GTLLG     +  ++I NSY V H E      +Q  LD +Y   M + +    PQE I+GW+ TG  ++  +A +H +
Sbjct:   13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGDMEQFKLDTQYASEMFELNQVTYPQEKIIGWYCTGKTLSRSAAALHGY 115          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_CRYNE (Eukaryotic translation initiation factor 3 subunit F OS=Cryptococcus neoformans GN=CNF04540 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   64 LQFGPSSAAT---SNVTAKVHPLVIFNICDCYVRRPDQAE--RVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            LQ  P+S++    S +T  VHP VI  I   + R    +E  RVIG L+G+   +G  VDIR+ + VPH E   Q+++D  +   M+    K   +EVIVGW+++   V   SA+I E+
Sbjct:   12 LQLPPTSSSLRPPSQIT--VHPSVIAQILTHHSRHSADSESTRVIGALMGNRSDNGQEVDIRSCFAVPHTEQGQQISVDRPFQQDMVNFLAKNGTKEVIVGWYASQKTVNSNSAIIQEY 128          
The following BLAST results are available for this feature:
BLAST of CX287339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PSD7_ARATH8.963e-1244.32Probable 26S proteasome non-ATPase regulatory subu... [more]
EI3F2_DROMO4.448e-1135.92Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CRYNE5.810e-1136.97Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01008E01SK Veg1 Citrus clementina cDNA clone C01008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287339 ID=CX287339; Name=CX287339; organism=Citrus clementina; type=EST; length=404bp
TTTGAATCGAGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAG
CGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATG
TAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTAC
GTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTC
CGTTTTGCCCGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTC
ACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACC
ATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATG
GTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAAT
TCTA
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