CX287340

Overview
NameCX287340
Unique NameCX287340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGE-VNLVEWLKTMVTNRNAEGVLDPRLQE---KPCSRALKRALLVAL 413
            H G E  ++H +I+S N+L+D  +  +L++FGL K++    +        + GY APE       N RSDVY+FGIL++E++ G+ P    R   E V+L   +K  V       V D    +    P    L  AL +A+
Sbjct:  489 HTGQEVPIIHGNIRSKNVLVDDFFFARLTEFGLDKIMVQAVADEIVSQAKSDGYKAPELHKMKKCNPRSDVYAFGILLLEILMGKKPGKSGRNGNEFVDLPSLVKAAVLEETTMEVFDLEAMKGIRSPMEEGLVHALKLAM 629          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: YR831_MIMIV (Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 3
Query:   24 VVHRDIKSSNILLDKQWNPKLSDFGLAKLLG-AERSYVTTRVMGTFGYVAPEYA--STGMLNERSDVYSFGILIMEVISGRNP 263
            +VHRD+KS N+LLD +WN K+SDFGL K+    ++      ++GT  ++APE    ST +    +DVYSFGI++ E+++   P
Sbjct:  904 IVHRDLKSLNLLLDSKWNVKVSDFGLTKVKSELDKKKTNDNIIGTIHWIAPEILNDSTEVDYILADVYSFGIILWELLTREQP 986          

HSP 2 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 3
Query:   18 PKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNP 263
            P +VHRDIK +NIL+D+ +N K++DFG A++   +    T    GT  + APE        E++DV+SFG+++ EV++G+ P
Sbjct: 1481 PMIVHRDIKPANILVDEHFNVKIADFGFARI---KEDNTTMTRCGTPCWTAPEVIRGEKYCEKADVFSFGVVMWEVLTGKEP 1559          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y9871_DICDI (Probable serine/threonine-protein kinase DDB_G0271682 OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 3
Query:   18 PKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNP 263
            P ++HRD+KS N+L+D  +N K+SDFGL++ +            GT  ++APE  +      + DVYSFGI++ E+++ + P
Sbjct:  478 PPIIHRDLKSLNLLVDNNFNVKVSDFGLSRFISGGIGSSAKTFCGTLSWIAPEVFNGSGYTTKVDVYSFGIVLWEILTHKQP 559          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: SPKA_DICDI (Stress-activated protein kinase alpha OS=Dictyostelium discoideum GN=spkA-1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 42/151 (27.81%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   15 EPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEW------------LKTMVTNRNAEGVL-------DPRLQEKP-CSRALKRALLV 407
            +P +VHRD+KS N+L++ +W  K+ DFGL++           ++ GTF Y APE       + +SDVYS  +++ E+++      Y RP  E   ++             L+  + N   E ++       DP L+ +P C+  L R + +
Sbjct:  465 DPPIVHRDLKSLNLLVNDKWEIKVCDFGLSRFNTGSNLETLVKMRGTFAYCAPEVYYGEQFSGKSDVYSIAVILWELVTRCINGRYERPFSEYKNLQHDFQIIIQTAKKNLRPTIPNACPESLVSLIQDCWDPNLENRPTCTDILSRLVTI 615          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   15 EPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRL 362
            +P   H ++KSSNILL    + ++SDFGLA+L+ A     TT    T GY APE      +++++DVYSFG++++E+++G+ P +       ++L  W+ ++        V D  L
Sbjct:  483 DPLSSHGNVKSSNILLTNSHDARVSDFGLAQLVSASS---TTPNRAT-GYRAPEVTDPRRVSQKADVYSFGVVLLELLTGKAPSNSVMNEEGMDLARWVHSVAREEWRNEVFDSEL 594          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: RIPK3_RAT (Receptor-interacting serine/threonine-protein kinase 3 OS=Rattus norvegicus GN=Ripk3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   12 LEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVM---GTFGYVAPEYA-STGMLNERSDVYSFGILIMEVISGR 257
            L P ++HRD+K SN+LLD + + KL+DFGL+   G  +S   +      GT  Y+APE   + G  ++ SDVYSFG+L+  V++GR
Sbjct:  135 LNPSLLHRDLKPSNVLLDLELHAKLADFGLSTFQGGSQSGSGSGSRDSGGTLAYLAPELLDNDGKASKASDVYSFGVLVWTVLAGR 220          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: PKNA_MYCLE (Probable serine/threonine-protein kinase pknA OS=Mycobacterium leprae GN=pknA PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   24 VVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNP 263
            +VHRD+K  NIL+      K++DFG+AK + A     T  VMGT  Y+APE A        SDVYS G++  EV+SG+ P
Sbjct:  137 LVHRDVKPGNILITPTGQVKITDFGIAKAVDAAPVTQTGMVMGTAQYIAPEQALGHDATPASDVYSLGVIGYEVVSGKRP 216          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: DRKB_DICDI (Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    9 GLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEV 293
            G  P ++HRD+KS N+L+D+ W  K++DFGL+ +   E+   T    GT  + +PE   +    E++DVYSFGI++ E  + ++P  +  PP +V
Sbjct:  505 GSTPVILHRDLKSHNLLVDENWKVKVADFGLSTI---EQQGATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDPY-FGIPPFQV 595          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 32/81 (39.51%), Postives = 54/81 (66.67%), Query Frame = 3
Query:   24 VVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYV-TTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNP 263
            ++HRD+KSSN+L+DK +N K++D G+A+    E S+  T   +GT  + APE       N+++DVYS+ I++ E+++G  P
Sbjct: 1196 IIHRDLKSSNLLMDKHFNIKIADLGIAR----ETSFTQTMTTIGTVAWTAPEILRHESYNQKADVYSYAIVLYELLTGEEP 1272          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: SHKC_DICDI (Dual specificity protein kinase shkC OS=Dictyostelium discoideum GN=shkC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVT-TRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSR 278
            HE   P  VHRDIKSSN+L+D+    K+ DFGL+ L    +     +   GT  Y+APE       NE SDVYSFGI++ E+++ + P  + R
Sbjct:  137 HES-NPVFVHRDIKSSNLLVDENMRVKICDFGLSALKQKHKMLKDQSSAKGTPLYMAPEVMMFKEFNESSDVYSFGIVLWEILTRKEPFSHHR 228          
The following BLAST results are available for this feature:
BLAST of CX287340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
TMKL1_ARATH3.976e-1231.91Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
YR831_MIMIV6.781e-1242.17Putative serine/threonine-protein kinase/receptor ... [more]
Y9871_DICDI6.781e-1236.59Probable serine/threonine-protein kinase DDB_G0271... [more]
SPKA_DICDI6.781e-1227.81Stress-activated protein kinase alpha OS=Dictyoste... [more]
RLK90_ARATH6.781e-1233.62Probable inactive receptor kinase RLK902 OS=Arabid... [more]
RIPK3_RAT6.781e-1243.02Receptor-interacting serine/threonine-protein kina... [more]
PKNA_MYCLE6.781e-1245.00Probable serine/threonine-protein kinase pknA OS=M... [more]
DRKB_DICDI6.781e-1236.84Probable serine/threonine-protein kinase drkB OS=D... [more]
Y9963_DICDI8.857e-1239.51Probable serine/threonine-protein kinase DDB_G0272... [more]
SHKC_DICDI8.857e-1241.94Dual specificity protein kinase shkC OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionC01008E02SK Veg1 Citrus clementina cDNA clone C01008E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287340 ID=CX287340; Name=CX287340; organism=Citrus clementina; type=EST; length=415bp
TGCATGAGGGGCTTGAACCAAAGGTTGTTCACCGTGACATCAAGTCAAGC
AACATTTTGCTCGATAAGCAGTGGAATCCGAAATTATCCGATTTTGGCCT
AGCAAAGCTTTTGGGCGCAGAGAGGAGCTACGTGACAACTCGTGTGATGG
GAACATTCGGGTATGTGGCACCAGAATATGCTAGCACTGGGATGTTGAAT
GAAAGAAGCGATGTATACAGTTTTGGTATCCTTATCATGGAAGTAATTTC
TGGTAGAAATCCAGTGGATTACAGCCGCCCTCCAGGGGAGGTGAATTTAG
TTGAGTGGCTCAAAACAATGGTCACAAATCGCAATGCAGAGGGTGTTTTG
GATCCTAGGTTGCAAGAGAAGCCTTGTTCAAGGGCATTGAAGCGTGCTCT
TTTAGTAGCTTTACG
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