CX287340

Overview
NameCX287340
Unique NameCX287340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.318e-26
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            HE    K+VHRDIK+SN+LLDK  N K+SDFGLAKL     ++++TR+ GT GY+APEYA  G L E++DVYSFG++ +E++SG++  ++      V L++W   +    +   ++DP L            L VAL
Sbjct:  794 HEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVAL 930          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.318e-26
Identity = 51/139 (36.69%), Postives = 95/139 (68.35%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSR--PPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H+  + K++HRD+K++NILLD+++   + DFGLAKL+    S+VTT V GT G++APEY STG  +E++DV+ +G++++E+I+G+   D +R     ++ L++W+K ++  +  E ++D  L+ K     +++ + +AL
Sbjct:  410 HDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL 548          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.318e-26
Identity = 57/139 (41.01%), Postives = 93/139 (66.91%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTT-RVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEV-NLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H+    K++HRD+K+SNILLD   NPK++DFG+A++ G +++   T RV+GTFGY++PEY + G  + +SDVYSFG+LI+E+ISG+    + +  G V NLV ++  +  N++   +LDP + +   S  + R + + L
Sbjct:  453 HQDSRLKIIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANTGRVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKSLHELLDPFINQDFTSEEVIRYIHIGL 591          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.251e-26
Identity = 53/139 (38.13%), Postives = 92/139 (66.19%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSR--PPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            HE   PK++HRD+K++N+LLD+ +   + DFGLAKL+   R+ VTT+V GT G++APEY STG  +ER+DV+ +GI+++E+++G+  +D+SR     +V L++ +K +   +    ++D  L  +     ++  + VAL
Sbjct:  406 HEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVAL 544          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.251e-26
Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 3
Query:   24 VVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAER-SYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            V+HRD+KSSNILLD+    K++DFG +K    E  SYV+  V GT GY+ PEY  T  L+E+SDV+SFG++++E++SGR P++  RP  E +LVEW K  +     + ++DP ++    + AL R + VAL
Sbjct:  718 VIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVAL 848          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: WAK2_ARATH (Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.078e-25
Identity = 53/136 (38.97%), Postives = 86/136 (63.24%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVA 410
            H      ++HRDIK++NILLDK    K++DFG ++L+  ++  +TT V GT GY+ PEY +TG+LNE+SDVYSFG+++ME++SG+  + + RP    NLV    +   N     ++D ++  +   R ++ A  +A
Sbjct:  518 HSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMDKEQLTTIVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPHCPKNLVSCFASATKNNRFHEIIDGQVMNEDNQREIQEAARIA 653          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.078e-25
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 3
Query:   24 VVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAER-SYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            V+HRD+KSSNILLD     K++DFG +K    E  SYV+  V GT GY+ PEY  T  L+E+SDV+SFG++++E++SGR P++  RP  E +LVEW K  +     + ++DP ++    + AL R + VAL
Sbjct:  717 VIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVAL 847          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.407e-25
Identity = 54/124 (43.55%), Postives = 87/124 (70.16%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTT-RVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEV-NLVEWLKTMVTNRNAEGVLDPRLQE 368
            H+    K++HRD+K+SNILLD   NPK++DFG+A++ G +++   T RV+GTFGY++PEY + G  + +SDVYSFG+LI+E+ISG+    + +  G V NLV ++  +  N+    ++DP ++E
Sbjct:  473 HQDSRLKIIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANTARVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKTMHELIDPFIKE 596          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.838e-25
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVN-LVEWLKTMVTNRNAEGVLDPRL 362
            HE  +PK++HRD+K++NILLD+ +   + DFGLAKLL  E S+VTT V GT G++APEY STG  +E++DV+ FGIL++E+I+G   +++ +   +   ++EW++ +      E ++D  L
Sbjct:  411 HEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDREL 531          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.401e-25
Identity = 58/138 (42.03%), Postives = 93/138 (67.39%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAE-RSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H G +P +VHRD+K++NILL++ +  KL+DFGL++    E  ++V+T V GT GY+ PEY  T  L E+SDVYSFGIL++E+I+ R+ +D SR    +   EW+  M+T  + + ++DP L E   S ++ +A+ +A+
Sbjct:  692 HNGCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGETHVSTVVAGTPGYLDPEYHRTNWLTEKSDVYSFGILLLEIITNRHVIDQSREKPHIG--EWVGVMLTKGDIQSIMDPSLNEDYDSGSVWKAVELAM 827          
The following BLAST results are available for this feature:
BLAST of CX287340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
Y1765_ARATH6.318e-2642.34Probable LRR receptor-like serine/threonine-protei... [more]
SERK4_ARATH6.318e-2636.69Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
CRK18_ARATH6.318e-2641.01Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
Y5129_ARATH8.251e-2638.13Probable LRR receptor-like serine/threonine-protei... [more]
NORK_MEDTR8.251e-2645.04Nodulation receptor kinase OS=Medicago truncatula ... [more]
WAK2_ARATH1.078e-2538.97Wall-associated receptor kinase 2 OS=Arabidopsis t... [more]
NORK_PEA1.078e-2545.04Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
CRK17_ARATH1.407e-2543.55Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
Y2239_ARATH1.838e-2542.98Probable LRR receptor-like serine/threonine-protei... [more]
Y5182_ARATH2.401e-2542.03Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC01008E02SK Veg1 Citrus clementina cDNA clone C01008E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287340 ID=CX287340; Name=CX287340; organism=Citrus clementina; type=EST; length=415bp
TGCATGAGGGGCTTGAACCAAAGGTTGTTCACCGTGACATCAAGTCAAGC
AACATTTTGCTCGATAAGCAGTGGAATCCGAAATTATCCGATTTTGGCCT
AGCAAAGCTTTTGGGCGCAGAGAGGAGCTACGTGACAACTCGTGTGATGG
GAACATTCGGGTATGTGGCACCAGAATATGCTAGCACTGGGATGTTGAAT
GAAAGAAGCGATGTATACAGTTTTGGTATCCTTATCATGGAAGTAATTTC
TGGTAGAAATCCAGTGGATTACAGCCGCCCTCCAGGGGAGGTGAATTTAG
TTGAGTGGCTCAAAACAATGGTCACAAATCGCAATGCAGAGGGTGTTTTG
GATCCTAGGTTGCAAGAGAAGCCTTGTTCAAGGGCATTGAAGCGTGCTCT
TTTAGTAGCTTTACG
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