CX287340

Overview
NameCX287340
Unique NameCX287340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.123e-25
Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVN---LVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            HE   PK++HRD+K++NILLD+ +   + DFGLAKLL    S+VTT V GT G++APEY STG  +E++DV+ FG+LI+E+I+G   +D     G+V    ++ W++T+   +    ++D  L+ +     L+  + +AL
Sbjct:  415 HEQCNPKIIHRDVKAANILLDESFEAIVGDFGLAKLLDQRDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELITGHKMIDQGN--GQVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELAL 552          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.123e-25
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVT-NRNAEG 344
            H    P +VHRD+K+SN+LLDK  N +++DFGLA+LL    S+V+T + GT GYVAPEY  T     R DVYS+G+L ME+ +GR  VD     GE  LVEW + ++T N  A+G
Sbjct:  930 HHECYPSIVHRDVKASNVLLDKHGNARVTDFGLARLLNVGDSHVSTVIAGTIGYVAPEYGQTWQATTRGDVYSYGVLTMELATGRRAVD----GGEECLVEWARRVMTGNMTAKG 1040          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.123e-25
Identity = 49/118 (41.53%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDP 356
            H G  P ++HRD+KSSNILLD     K+SDFGL++    + ++V++   GT GY+ PEY ++  L E+SDVYSFG+++ E++SG+ PV       E+N+V W ++++   +  G++DP
Sbjct:  720 HTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWARSLIRKGDVCGIIDP 837          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.192e-24
Identity = 59/139 (42.45%), Postives = 94/139 (67.63%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKL--LGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H G +P +VHRD+K++NILLD+ +  KL+DFGL++   +G E ++V+T V GT GY+ PEY  T  LNE+SDVYSFGI+++E+I+ R  +  +R   + ++  W+  M+T  + E V+DPRL       ++ +AL +A+
Sbjct:  687 HTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGE-THVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTRE--KPHIAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAM 822          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.192e-24
Identity = 57/137 (41.61%), Postives = 89/137 (64.96%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            HE    ++VHRD+K+SNILLD +  P++SDFGLAKL   ++++++TRV GT GY+APEYA  G L E++DVY+FG++ +E++SGR   D +    +  L+EW   +        ++D +L +     A KR + +AL
Sbjct:  807 HEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEEEKKYLLEWAWNLHEKSRDIELIDDKLTDFNMEEA-KRMIGIAL 942          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.192e-24
Identity = 51/120 (42.50%), Postives = 80/120 (66.67%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRL 362
            H    P+++HRDIKSSNILLD+ +   LSDFG+AK + A +++ +T V+GT GY+ PEYA T  +NE+SD+YSFGI+++E+++G+  VD      E NL + + +   +      +DP +
Sbjct:  762 HHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIPASKTHASTYVLGTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKKAVD-----NEANLHQLILSKADDNTVMEAVDPEV 876          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 54/122 (44.26%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQE 368
            HE    ++VHRD+K+SNILLD +  PK+SDFGLAKL   ++++++TRV GT GY+APEYA  G L E++DVY+FG++ +E++SGR   D +    +  L+EW   +        ++D +L E
Sbjct:  806 HEEARLRIVHRDVKASNILLDSKLVPKVSDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEDEKRYLLEWAWNLHEKGREVELIDHQLTE 927          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 57/138 (41.30%), Postives = 92/138 (66.67%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAER-SYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H G  P +VHRD+K++NILL+     K++DFGL+K+   +  S+V T VMGT GYV PEY +T  LNE+SDVYSFGI+++E+I+G+  +  +    ++N+V +++  +   + +GV+DPRL     S +  + + VA+
Sbjct:  693 HHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFLKMGDIDGVVDPRLHGDFSSNSAWKFVEVAM 830          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 3
Query:   27 VHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNA 338
            +HRD+K SNILL      K++DFGL +L    +  + TR+ GTFGY+APEYA TG +  + DVYSFG+++ME+I+GR  +D S+P   ++LV W K M  N+ A
Sbjct:  714 IHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEA 817          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVD 269
            H    P+++HRDIKSSNILLD  +  +LSDFG+AK + A ++Y +T V+GT GY+ PEYA T  LNE+SD+YSFGI+++E+++G+  VD
Sbjct:  765 HHDCTPRIIHRDIKSSNILLDGNFEARLSDFGIAKSIPATKTYASTYVLGTIGYIDPEYARTSRLNEKSDIYSFGIVLLELLTGKKAVD 853          
The following BLAST results are available for this feature:
BLAST of CX287340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
Y5457_ARATH9.123e-2540.00Probable LRR receptor-like serine/threonine-protei... [more]
Y1743_ARATH9.123e-2549.57Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH9.123e-2541.53Probable LRR receptor-like serine/threonine-protei... [more]
Y2289_ARATH1.192e-2442.45Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH1.192e-2441.61Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH1.192e-2442.50LRR receptor-like serine/threonine-protein kinase ... [more]
Y5614_ARATH1.556e-2444.26Probable LRR receptor-like serine/threonine-protei... [more]
Y4291_ARATH1.556e-2441.30Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH1.556e-2448.08Probable receptor protein kinase TMK1 OS=Arabidops... [more]
ERL2_ARATH1.556e-2453.93LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC01008E02SK Veg1 Citrus clementina cDNA clone C01008E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287340 ID=CX287340; Name=CX287340; organism=Citrus clementina; type=EST; length=415bp
TGCATGAGGGGCTTGAACCAAAGGTTGTTCACCGTGACATCAAGTCAAGC
AACATTTTGCTCGATAAGCAGTGGAATCCGAAATTATCCGATTTTGGCCT
AGCAAAGCTTTTGGGCGCAGAGAGGAGCTACGTGACAACTCGTGTGATGG
GAACATTCGGGTATGTGGCACCAGAATATGCTAGCACTGGGATGTTGAAT
GAAAGAAGCGATGTATACAGTTTTGGTATCCTTATCATGGAAGTAATTTC
TGGTAGAAATCCAGTGGATTACAGCCGCCCTCCAGGGGAGGTGAATTTAG
TTGAGTGGCTCAAAACAATGGTCACAAATCGCAATGCAGAGGGTGTTTTG
GATCCTAGGTTGCAAGAGAAGCCTTGTTCAAGGGCATTGAAGCGTGCTCT
TTTAGTAGCTTTACG
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