CX287340

Overview
NameCX287340
Unique NameCX287340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.721e-23
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKL-LGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEW 308
            HE  + +V++RD K++NILLD  +N KLSDFGLAK     + ++V+T+V+GT GY APEY +TG L  +SDVYSFG++++E+ISGR  +D S    E +LV+W
Sbjct:  209 HEA-KSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDW 310          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.247e-23
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLG-AERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRN 335
            HE  +P ++HRD+KS+NILLD+    K++DFGL+KL+G  E+++VTT+V GT GY+ PEY  T  L E+SDVY FG++++E+++G++P+D     G   + E  K M  +RN
Sbjct:  747 HELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPID----RGSYVVKEVKKKMDKSRN 854          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.247e-23
Identity = 49/127 (38.58%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGA-----ERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQE 368
            H   +P + HRD+KSSNILLD++ N K+SDFGL++L+         S++ T   GT GY+ PEY     L ++SDVYSFG++++E+++ +  +D++R   +VNLV ++  M+        +DP L++
Sbjct:  479 HSAAQPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEMVTSKKAIDFTREEEDVNLVMYINKMMDQERLTECIDPLLKK 605          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: WAK1_ARATH (Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.247e-23
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVA 410
            H      ++HRDIK++NILLD     K++DFG ++L+  ++  + T V GT GY+ PEY +TG+LNE+SDVYSFG+++ME++SG+  + + RP    +LV +  T       + ++   +  +   + ++ A  +A
Sbjct:  523 HSSASIPIIHRDIKTANILLDVNLTAKVADFGASRLIPMDKEELETMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFKRPQSSKHLVSYFATATKENRLDEIIGGEVMNEDNLKEIQEAARIA 658          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: CRK19_ARATH (Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.247e-23
Identity = 53/139 (38.13%), Postives = 89/139 (64.03%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSY-VTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISG-RNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H+     ++HRD+K+ NILLD   NPK++DFG+A++ G +++  +T RV+GT+GY++PEYA  G  + +SDVYSFG+L++E+ISG +N   Y       NLV +   + +N +   ++DP   +   +  + R + +AL
Sbjct:  440 HQDSRLTIIHRDLKAGNILLDDDMNPKIADFGMARIFGMDQTEAMTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGMKNSSLYQMDESVGNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIAL 578          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 53/139 (38.13%), Postives = 90/139 (64.75%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKL--LGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H G +  ++HRDIK++NILLD+ +  K+SDFGL+++    A +++V+T V GTFGY+ PEY    +L E+SDVYSFG++++EV+  R     S PP + +L+ W+K+    R  + ++D  L     S ++++   +A+
Sbjct:  642 HTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWVKSNFNKRTVDQIIDSDLTADITSTSMEKFCEIAI 780          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 56/138 (40.58%), Postives = 93/138 (67.39%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGA-ERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H G +P +VHRD+KS NILLD+ +  KL+DFGL++     E S+V+T V+GT GY+ PEY  T  L E+SDVYSFGI+++E+I+ +  ++ +      ++ E ++TM+T  +   ++DP L  +  S ++++AL +A+
Sbjct:  687 HSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVVGTPGYLDPEYYRTYRLTEKSDVYSFGIVLLEIITNQPVLEQANE--NRHIAERVRTMLTRSDISTIVDPNLIGEYDSGSVRKALKLAM 822          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVD--YSRPPGEVNLVEW 308
            H+   P+V+HRD+K SNILLD   N  LSDFGLA+LLG   ++ TT V GTFGYVAPEYA T  +++++DVYS+G++++E++S +  +D  +       N+V+W
Sbjct:  985 HDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNGFNIVQW 1088          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAK---LLGAERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEK 371
            H    P +VHRD+KSSNILLD  +  K++DFG+AK   + G++     + + G+ GY+APEY  T  +NE+SD+YSFG++++E+++G+ P D     G+ ++ +W+ T +     E V+DP+L  K
Sbjct:  808 HHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSEL--GDKDMAKWVCTALDKCGLEPVIDPKLDLK 931          
BLAST of CX287340 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 54/139 (38.85%), Postives = 87/139 (62.59%), Query Frame = 3
Query:    3 HEGLEPKVVHRDIKSSNILLDKQWNPKLSDFGLAKLLGAERSYVTTR-VMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVISG-RNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLQEKPCSRALKRALLVAL 413
            H+     ++HRD+K+ NILLD   NPK++DFG+A++ G +++   TR V+GT+GY+APEYA  G  + +SDVYSFG+L+ E+ISG +N   Y       NLV +   + +N +   ++DP   +   +  + R + +AL
Sbjct:  622 HQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSFGDNYQTHDITRCIHIAL 760          
The following BLAST results are available for this feature:
BLAST of CX287340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
APK2A_ARATH1.721e-2351.46Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5977_ARATH2.247e-2346.43Probable leucine-rich repeat receptor-like protein... [more]
WAKLQ_ARATH2.247e-2338.58Wall-associated receptor kinase-like 20 OS=Arabido... [more]
WAK1_ARATH2.247e-2335.29Wall-associated receptor kinase 1 OS=Arabidopsis t... [more]
CRK19_ARATH2.247e-2338.13Cysteine-rich receptor-like protein kinase 19 OS=A... [more]
Y5389_ARATH2.935e-2338.13Probable receptor-like protein kinase At5g38990 OS... [more]
Y5169_ARATH2.935e-2340.58Probable LRR receptor-like serine/threonine-protei... [more]
RPK2_ARATH2.935e-2348.08LRR receptor-like serine/threonine-protein kinase ... [more]
RLK5_ARATH2.935e-2339.68Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
CRK23_ARATH2.935e-2338.85Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionC01008E02SK Veg1 Citrus clementina cDNA clone C01008E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287340 ID=CX287340; Name=CX287340; organism=Citrus clementina; type=EST; length=415bp
TGCATGAGGGGCTTGAACCAAAGGTTGTTCACCGTGACATCAAGTCAAGC
AACATTTTGCTCGATAAGCAGTGGAATCCGAAATTATCCGATTTTGGCCT
AGCAAAGCTTTTGGGCGCAGAGAGGAGCTACGTGACAACTCGTGTGATGG
GAACATTCGGGTATGTGGCACCAGAATATGCTAGCACTGGGATGTTGAAT
GAAAGAAGCGATGTATACAGTTTTGGTATCCTTATCATGGAAGTAATTTC
TGGTAGAAATCCAGTGGATTACAGCCGCCCTCCAGGGGAGGTGAATTTAG
TTGAGTGGCTCAAAACAATGGTCACAAATCGCAATGCAGAGGGTGTTTTG
GATCCTAGGTTGCAAGAGAAGCCTTGTTCAAGGGCATTGAAGCGTGCTCT
TTTAGTAGCTTTACG
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