CX287341

Overview
NameCX287341
Unique NameCX287341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.745e-34
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   94 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.526e-32
Identity = 64/97 (65.98%), Postives = 83/97 (85.57%), Query Frame = 1
Query:  100 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 390
            +Y  +++E  +DFKN QLPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+  +  +DFL+D+VP+DE
Sbjct:   38 NYWIEQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDE 134          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.688e-31
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   94 FWSYQRQEIEQAN--------DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 384
            +W     EIE  N        DFK+H LP ARI+K+MK DEDV+MISAEAPI+FAKACE+FI ELT+R+W  AE NKRRTLQK DIA A+ ++D+FDFL+D+VPR
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPR 237          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC8_ARATH (Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana GN=NFYC8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.636e-28
Identity = 59/93 (63.44%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   94 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 372
            FWS   +E+E   DFKNH LP+ RIKKIMK D DV MI++EAPIL +KACE+FI++LT+RSWLHA+E+KR TLQK+++ AA+ +T IFDFL+D
Sbjct:   21 FWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD 110          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC5_ARATH (Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana GN=NFYC5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.059e-25
Identity = 54/99 (54.55%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   94 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 390
            FWS   + +E   + KNH+ P++RIK+IMK D DV MI+AEAP L +KACE+F+++LT+RSWLHA+E+ R T++K+D+ A +++T IFDFL D VP+DE
Sbjct:   21 FWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDE 116          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: HAP5_SCHPO (Transcriptional activator hap5 OS=Schizosaccharomyces pombe GN=hap5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.969e-25
Identity = 52/85 (61.18%), Postives = 73/85 (85.88%), Query Frame = 1
Query:  139 KNHQLPLARIKKIMKADEDVR--MISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRD 387
            K   LPLARIKK+MK D+DV+  MISAEAP LFAK  E+FI ELT+R+WLHA++N+RRTLQ++DIA A+++++++DFL+DI+ +D
Sbjct:  105 KTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKD 189          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC7_ARATH (Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana GN=NFYC7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  100 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ------KNDIAAAITRTDIFDFLVDIVPRD 387
            +Y   ++  A D K+H  PL RIKKIMK++ +V M++AEAP+L +KACE+ IL+LT+RSWLH  E  R+TL+      ++DI+AA TR+  F FL D+VPRD
Sbjct:   47 NYWIAQMGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRD 148          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYCA_ARATH (Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana GN=NFYC10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.935e-19
Identity = 42/97 (43.30%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   91 MFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 381
            +FW+ QR+++   N      LPL+R++KI+K+D +V+ IS + P LF+KACE FILE+T+R+W+H +   R T+++ DI  A+  +  +DFL+D VP
Sbjct:   50 VFWNNQREQL--GNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144          
The following BLAST results are available for this feature:
BLAST of CX287341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC_BOVIN4.745e-3466.99Nuclear transcription factor Y subunit gamma OS=Bo... [more]
NFYC6_ARATH1.526e-3265.98Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
HAP5_YEAST1.688e-3161.90Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC8_ARATH6.636e-2863.44Nuclear transcription factor Y subunit C-8 OS=Arab... [more]
NFYC5_ARATH1.059e-2554.55Nuclear transcription factor Y subunit C-5 OS=Arab... [more]
HAP5_SCHPO8.969e-2561.18Transcriptional activator hap5 OS=Schizosaccharomy... [more]
NFYC7_ARATH1.870e-2250.98Nuclear transcription factor Y subunit C-7 OS=Arab... [more]
NFYCA_ARATH1.935e-1943.30Nuclear transcription factor Y subunit C-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC01008E03SK Veg1 Citrus clementina cDNA clone C01008E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287341 ID=CX287341; Name=CX287341; organism=Citrus clementina; type=EST; length=400bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCGGCACGAGGCGCAACGGCGCC
GTTTCATCACCTAATCCAACAGCAGCAGCAGCAGCTCCAAATGTTCTGGT
CCTACCAGCGGCAAGAAATCGAACAAGCGAACGACTTCAAGAACCACCAG
CTGCCGCTCGCCCGCATCAAGAAAATCATGAAGGCCGACGAGGACGTTCG
CATGATCTCCGCCGAGGCCCCGATTCTGTTCGCCAAGGCCTGCGAGTTGT
TCATCCTCGAGCTCACGATCCGCTCGTGGCTCCACGCCGAGGAGAACAAG
CGCAGGACTCTACAGAAGAACGACATCGCGGCCGCCATCACCAGGACCGA
CATCTTCGACTTCTTGGTCGATATTGTGCCTAGGGATGAGATTAAGGACG
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