CX287343

Overview
NameCX287343
Unique NameCX287343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  193 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIE 88          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  160 EEDKKPVDQSA-------HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            + D KP  Q         +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+
Sbjct:    3 DTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIE 89          
The following BLAST results are available for this feature:
BLAST of CX287343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE2.117e-1350.72Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SUMO1_ONCMY3.610e-1342.53Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

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Properties
Property NameValue
Genbank descriptionC01008E05SK Veg1 Citrus clementina cDNA clone C01008E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287343 ID=CX287343; Name=CX287343; organism=Citrus clementina; type=EST; length=410bp
TGCTCTTATAGTGTCGGTTTTTTGTACTTATTTGTAGTCGCAGGGGGGAC
GACAAAACCCTAACCAGAGGCGCAGAAAGAAAGAGAGGGTAAAATTCAAT
TCTAACAACCTGTAAGGATGTCAGCAACTGGTGGCGGCGGCGGCGGCGGC
GGTGGTCAGGAGGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAA
CCTCAAAGTCAAGGGCCAGGATGGCAATGAGGTATTTTTTAGAATTAAGC
GAAGCACCCAGTTGAAAAAGCTCATGAATGCCTACTGTGATCGGCAGTCG
GTGGAGTTAAACTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGG
AGAGCAGACTCCAGATGAGCTTGAGATGGAGGATGGAGATGAAATTGATG
CAATGCTGCA
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