CX287346

Overview
NameCX287346
Unique NameCX287346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.868e-44
Identity = 83/132 (62.88%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 2.198e-43
Identity = 84/132 (63.64%), Postives = 109/132 (82.58%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.871e-43
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.750e-43
Identity = 84/132 (63.64%), Postives = 108/132 (81.82%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF     PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.898e-43
Identity = 82/132 (62.12%), Postives = 110/132 (83.33%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+N+D+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.396e-43
Identity = 82/132 (62.12%), Postives = 109/132 (82.58%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KR++    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.431e-42
Identity = 79/135 (58.52%), Postives = 109/135 (80.74%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN----EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N    E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLM
Sbjct:    6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLM 140          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 3
Query:   54 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDME 419
            ++ DV++ GTG+ E +L+  L+  G  VLH+D+NDYYG  S++L + Q+ KR+  NE     +                   SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E
Sbjct:   45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRW-VNEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQE 182          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   63 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPAT 410
            DV+++GTGL+E IL+  LS  G +VLH+D N YYG   S+L + QL K           +F+       G +Q   +  +S+DY +D+ PK +     L+ +LI + V +YL F+++    V+ N     KV AT
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNAT 137          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12
Identity = 41/149 (27.52%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   45 NMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQP---------------------------PAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 410
            ++ E++D++V+GTG  E  ++   S  G  VLH+D N+YYG   SS ++  L  R     +P                            + L  SR +++D+ P+ + A G LV++LI +++ +Y  F+AVD   + + G++  VP +
Sbjct:    4 DLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVPCS 152          
The following BLAST results are available for this feature:
BLAST of CX287346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDIB_MOUSE9.868e-4462.88Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_BOVIN2.198e-4363.64Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_HUMAN2.871e-4362.88Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_PIG3.750e-4363.64Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDIB_CANFA4.898e-4362.12Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDIB_PONAB6.396e-4362.12Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDI1_YEAST2.431e-4258.52Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RAEP_YEAST2.007e-1231.43Rab proteins geranylgeranyltransferase component A... [more]
RAEP_CANAL2.621e-1234.81Rab proteins geranylgeranyltransferase component A... [more]
RABEP_DROME5.839e-1227.52Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionC01008E08SK Veg1 Citrus clementina cDNA clone C01008E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287346 ID=CX287346; Name=CX287346; organism=Citrus clementina; type=EST; length=442bp
AAAACCCTCTGAATCAGAAATCAAAAATCAAAAATCAAATCATCAACATG
GATGAAGAGTATGATGTCATCGTCTTGGGAACCGGTCTCAAGGAATGCAT
CCTCAGTGGTCTCCTCTCTGTTGATGGCCTCAAGGTCCTGCACATGGACA
GGAATGATTATTATGGAGGAGAGTCATCATCGCTCAATCTCATTCAGCTC
TGGAAGAGATTTAGGGGAAATGAACAACCTCCTGCTCACTTGGGCTCTAG
TAGGGATTATAATGTTGACATGATCCCGAAGTTTATAATTGCAAATGGAG
CTCTTGTTCGTGTCCTCATTCATACTGATGTTACAAAGTATCTGTACTTC
AAAGCTGTGGATGGCAGCTTCGTCTATAATAAAGGAAAGGTCCACAAGGT
GCCAGCAACTGATATGGAAGCGCTCAAATCTCCACTCATGGG
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