CX287346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 9.868e-44 Identity = 83/132 (62.88%), Postives = 111/132 (84.09%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+ ++ L+KRF+ QPPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 2.198e-43 Identity = 84/132 (63.64%), Postives = 109/132 (82.58%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+ PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 2.871e-43 Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+ PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.750e-43 Identity = 84/132 (63.64%), Postives = 108/132 (81.82%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 4.898e-43 Identity = 82/132 (62.12%), Postives = 110/132 (83.33%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+ ++ L+KRF+ PPA +G RD+N+D+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 6.396e-43 Identity = 82/132 (62.12%), Postives = 109/132 (82.58%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KR++ PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP+T+ EAL S LM Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLM 132
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.431e-42 Identity = 79/135 (58.52%), Postives = 109/135 (80.74%), Query Frame = 3 Query: 48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN----EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440 +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N E+ + G RD+NVD+IPKF++ANG L +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLM Sbjct: 6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLM 140
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12 Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 3 Query: 54 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDME 419 ++ DV++ GTG+ E +L+ L+ G VLH+D+NDYYG S++L + Q+ KR+ NE + SSRD+ +D+ PK + A L+ +LI + V +YL F+++ Y K+ T E Sbjct: 45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRW-VNEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQE 182
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12 Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 3 Query: 63 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPAT 410 DV+++GTGL+E IL+ LS G +VLH+D N YYG S+L + QL K +F+ G +Q + +S+DY +D+ PK + L+ +LI + V +YL F+++ V+ N KV AT Sbjct: 5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNAT 137
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12 Identity = 41/149 (27.52%), Postives = 74/149 (49.66%), Query Frame = 3 Query: 45 NMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQP---------------------------PAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 410 ++ E++D++V+GTG E ++ S G VLH+D N+YYG SS ++ L R +P + L SR +++D+ P+ + A G LV++LI +++ +Y F+AVD + + G++ VP + Sbjct: 4 DLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVPCS 152 The following BLAST results are available for this feature:
BLAST of CX287346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287346 ID=CX287346; Name=CX287346; organism=Citrus clementina; type=EST; length=442bpback to top |