CX287350

Overview
NameCX287350
Unique NameCX287350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13620 contig Ccv1_Contig13620:917..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.548e-14
Identity = 58/136 (42.65%), Postives = 72/136 (52.94%), Query Frame = 1
Query:   25 ERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-------------------------KPIQDPE--EAAKRLMQEAYQRGSADNITCVVV 348
            E  RIE AGG V+ W G  RV GVLA+SR+ GDR LK  ++ DPE+         + LILASDG+WDV+T+EEA  M                          K  +DP    AA+ L + A QRGS DNI+ VVV
Sbjct:  286 EAARIEAAGGKVIQWNGA-RVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVV 420          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 57/135 (42.22%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   25 ERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI------------------------QDPE--EAAKRLMQEAYQRGSADNITCVVV 348
            E  RIE AGG V+ W G  RV GVLA+SR+ GDR LK  V+ DPE+         + LILASDGLWDV+TNEE   + +                          +DP    AA+ L + A Q+GS DNI+ VVV
Sbjct:  276 EAARIEAAGGKVIRWNGA-RVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVV 409          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 44/128 (34.38%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSS 378
            E +RI + GG++       + GVL+V+RA GD  +K        ++A+PE Q+  +    EFLI+  DG+WDV++++ AV +++       DPE  A+ L  EA +  + DN+T +V+ F +  GG S
Sbjct:  223 EHERITECGGYIE---DGYLNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDDPERCARELAMEAKRLQTFDNLTVIVICFGSELGGGS 347          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 369
            E +R+  +GG++       + GVL+V+RA GD  +K        ++A+PE ++ ++    EFLI+  DG+WDV+T++ AV+++    +   DPE  A+ L+ EA +  +ADN+T +VV F++  G
Sbjct:  230 ECERVAASGGYIE---DGYLNGVLSVTRALGDWDMKMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLRQHDDPERCARELVMEAKRLETADNLTVIVVCFVSELG 351          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   34 RIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI-------QDPE-------EAAKRLMQEAYQRGSADNITCVVV 348
            RI+ AGG V++    RV GVLA+SRA GD  LK YV+ DPE+         E LILASDGLWDVV NE A  + +          D +       +AA  L + A  R S+DN++ VVV
Sbjct:  269 RIQQAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRGAGAGDDSDAAHNACSDAALLLTKLALARQSSDNVSVVVV 387          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQ-EEVIDSSLEFLILASDGLWDVVTNEEAVAMIK 258
            E +RI  AGG V++    RV G+LA+SRA GD  LK YV+ DPE++  E  D   EFLILASDGLWDVV+NE A  +++
Sbjct:  236 ELERIHAAGGRVIFWDGARVFGMLAMSRAIGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVR 314          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-----KPIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E+ RIE  GGFV     WRV G LAVSRA GD   K YV  + +     +  S ++L+LA DG +DVV + E   ++     +   +    A+ L+  A  RGS DNIT +VV
Sbjct:  296 EKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARDRGSHDNITVMVV 408          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER RIE  GG V++ G   + G L+V+RA GD  +K        +  +PE++E V+    E+LI+  DGLWDV++++ AV M++       DPE  ++ L++EA QR S DN+T VVV F
Sbjct:  211 ERLRIEKLGG-VIYDGY--LNGQLSVARALGDWHIKGTKGSLCPLSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPERCSQALVKEALQRNSCDNLTVVVVCF 327          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 54/136 (39.71%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   25 ERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-------------PI--------QDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 366
            E  RIE AGG V+ W G  RV GVLA+SR+ GD+ L+ +V+ DPE+         E LILASDGLWDV++N+EA    +             P+        Q  + AA+ L + A Q GS DNI+ +V+   A +
Sbjct:  371 EYARIEKAGGKVIQWQGA-RVSGVLAMSRSIGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRILAWHKKNGALPLAERGVGEDQACQAAAEYLSKLAIQMGSKDNISIIVIDLKAQR 505          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 53/142 (37.32%), Postives = 73/142 (51.41%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----------------------------------PIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E  RI+ AGG V++    RV GVLA+SRA GD  LK YV++ PE+      +  +FLILASDGLWDVV+NE A ++++                                  P +  EEA+  L + A  R S+DN++ VVV
Sbjct:  266 ELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALARQSSDNVSVVVV 407          
The following BLAST results are available for this feature:
BLAST of CX287350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
P2C56_ARATH3.548e-1442.65Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C77_ARATH6.051e-1442.22Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C02_ORYSJ6.051e-1434.38Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C47_ORYSJ7.903e-1434.40Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C37_ARATH7.903e-1443.70Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C30_ORYSJ7.903e-1454.43Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
PPM1F_MOUSE1.032e-1339.82Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
P2C47_ARATH1.032e-1340.83Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C07_ARATH1.032e-1339.71Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C78_ARATH1.348e-1337.32Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01008F01SK Veg1 Citrus clementina cDNA clone C01008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287350 ID=CX287350; Name=CX287350; organism=Citrus clementina; type=EST; length=529bp
CTCGTGCCGAATTCGGCACGAGGTGAGCGTCAACGGATTGAGGATGCAGG
AGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAGTTCTTGCCG
TTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTGCTGAT
CCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTTATCCT
TGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGTTGCGA
TGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAG
GAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCG
GTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACAT
CCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCA
GTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTG
TAATGATAGAACATGAACAAAAAGCTTAC
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