CX287350

Overview
NameCX287350
Unique NameCX287350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13620 contig Ccv1_Contig13620:917..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C34_ARATH (Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 41/103 (39.81%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   94 LAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAY------QRGSA-DNITCVVVRFLANQGGSS 378
            LA+SRAFGD  +K Y +V+ PE+ +  I    +F+ILA+DG+WDV++N+EA+ ++    +  +AAKRL+Q+A       +RG A D+I+ V + F ++    S
Sbjct:  255 LAMSRAFGDYCIKDYGLVSVPEVTQRHISIRDQFIILATDGVWDVISNQEAIDIVSSTAERAKAAKRLVQQAVRAWNRKRRGIAMDDISAVCLFFHSSSSSPS 357          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY---------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-KPIQDPEE---AAKRLMQEAYQRGSADNITCVVVRF 354
            ER+RIE  GG+V       + G LAV+RA GD  L+           + A+PE++   +    EFLI+ SDG+WD  +N+ AV    K +Q+  +     K++++EA +RG++DN+T V+V F
Sbjct:  200 ERKRIESLGGYV---DDGYLNGQLAVTRALGDWHLEGLKEVGEPGGPLSAEPELKMITLTKEDEFLIIGSDGIWDFFSNQNAVDFTRKRLQEHNDLRLCCKQIVEEAIRRGASDNLTAVMVSF 319          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWA-GTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-PIQDPEEAA---KRLMQEAYQRG--SADNITCVVVRFLANQG 369
            E QRI  AGG V ++ G+ RV   +AVSRA GD   K         Q +   PEI+ + +    EFL++A DG+WDV+ N+  V  ++  + +  E +   + L+QEA  R   S DN++ ++VRFL  +G
Sbjct:  196 ETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILVRFLHPEG 326          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            E+ RIE  GG V++ G   + G L+V+RA GD  +K        +  +PE+QE  +    EFLI+  DGLWDV++++ AV + +       DPE  ++ L++EA +R + DN+T +VV F
Sbjct:  228 EKVRIEKLGG-VVYDGY--LNGQLSVARAIGDWHMKGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNTCDNLTVIVVCF 344          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI--------------KPIQDP--EEAAKRLMQEAYQRGSADNITCVVVR 351
            ER RI+ AGG V      RV GVL VSR+ GD   K+  V + P+I+   +  +  F++LA DGL+ V T EEAV  I              KP  D   E A  RL  +A QRGSADN+T +VVR
Sbjct:  267 ERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKPAVDARYEAACNRLANKAVQRGSADNVTVMVVR 389          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI--------------KPIQDP--EEAAKRLMQEAYQRGSADNITCVVVR 351
            ER RI+ AGG V      RV GVL VSR+ GD   K+  V + P+I+   +  +  F++LA DGL+ V T EEAV  I              KP  D   E A  RL  +A QRGSADN+T +VVR
Sbjct:  267 ERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDDKIQTREGKPAVDARYEAACNRLANKAVQRGSADNVTVMVVR 389          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI--------------KPIQDP--EEAAKRLMQEAYQRGSADNITCVVVR 351
            ER RI+ AGG V      RV GVL VSR+ GD   K+  V + P+I+   +  +  F++LA DGL+ V T EEAV  I              KP  D   E A  RL  +A QRGSADN+T +VVR
Sbjct:  245 ERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQRREGKPTVDARYEAACNRLANKAVQRGSADNVTVMVVR 367          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAV----AMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            E++RI++AGG VM     RV G LAVSRA GD   K         Q V  +PE+ E +     EF++LA DG+WDV++NEE      + ++   D E     ++     +GS DN++ V+V F
Sbjct:  176 EKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCF 295          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ---------YVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER+RI DAGG V      RV G LAVSRA GD   KQ          V A+PE+         EF++LASDG+WD ++  +   ++    +   D E    +L+     +GS DN+TC+VV F
Sbjct:  200 ERERIHDAGGTVRRR---RVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGSLDNMTCMVVCF 319          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 51/134 (38.06%), Postives = 68/134 (50.75%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-----------------------PIQDPEE---AAKRLMQEAYQRGSADNITCVVV 348
            ER RIE AGG V+     RV G+LA SRA GDR LK  V  +PE+     +S  E L+LASDGLWDV++++ A  + +                         Q+P     AA  L + A  R S+DNI+ VV+
Sbjct:  276 ERARIEAAGGRVLVVDGARVEGILATSRAIGDRYLKPMVAWEPEVTFMRRESGDECLVLASDGLWDVLSSQLACDIARFCLREETPSSLDLNRMAQEDDNDGEQNPSRSVLAATLLTRLALGRQSSDNISVVVI 409          
The following BLAST results are available for this feature:
BLAST of CX287350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
P2C34_ARATH5.664e-1239.81Probable protein phosphatase 2C 34 OS=Arabidopsis ... [more]
P2C27_ORYSJ7.397e-1236.59Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C42_ORYSJ9.661e-1236.64Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
P2C27_ARATH9.661e-1237.50Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
ILKAP_RAT9.661e-1242.86Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE9.661e-1242.86Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_BOVIN9.661e-1242.86Integrin-linked kinase-associated serine/threonine... [more]
PPM1B_RAT1.262e-1137.40Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PPMBL_MOUSE2.811e-1138.21Probable protein phosphatase 1B-like OS=Mus muscul... [more]
P2C75_ARATH2.811e-1138.06Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01008F01SK Veg1 Citrus clementina cDNA clone C01008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287350 ID=CX287350; Name=CX287350; organism=Citrus clementina; type=EST; length=529bp
CTCGTGCCGAATTCGGCACGAGGTGAGCGTCAACGGATTGAGGATGCAGG
AGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAGTTCTTGCCG
TTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTGCTGAT
CCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTTATCCT
TGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGTTGCGA
TGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAG
GAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCG
GTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACAT
CCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCA
GTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTG
TAATGATAGAACATGAACAAAAAGCTTAC
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