CX287359

Overview
NameCX287359
Unique NameCX287359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9801 contig Ccv1_Contig9801:253..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177
            G++ +AKV+ +R+SG+SRGFGFVTY S +  + A  +++G +L+GR+IRVS A +RP
Sbjct:  232 GNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288
[Close]
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174
            ++G+I ++KVIT+RE+G+SRGFGFVT+ S  S   A   M+G+EL+GRNI V+ A  R
Sbjct:   30 SYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
The following BLAST results are available for this feature:
BLAST of CX287359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ROC2_NICPL6.320e-1150.8831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRPA_MAIZE6.320e-1153.45Glycine-rich RNA-binding, abscisic acid-inducible ... [more]

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Properties
Property NameValue
Genbank descriptionC01008F12SK Veg1 Citrus clementina cDNA clone C01008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287359 ID=CX287359; Name=CX287359; organism=Citrus clementina; type=EST; length=434bp
AACTTTGGCGATATCACTGAAGCAAAGGTTATTACTGAGAGAGAATCTGG
GAAGTCAAGAGGATTTGGGTTCGTTACCTACGACTCTAATGAATCTGCCA
GCTCGGCACAGTCTGCAATGGATGGCCAGGAGCTAAATGGGAGAAACATT
CGGGTGTCTTTTGCCAATGACAGACCTCCTCGCTCTGACGGTGGCTATGG
TGGAGGGAATGATGGATCTTATGGCGGCAACCGTGGCGGTTACAGAGTCA
ACTACAGAGGAGGGGATGATGGTTTTTAAGGGGATTCTATTCAATTTTTG
GGCGTGCTTTAACTAGGAATTAAAGTTTTATGTTTGTTTTAAGGATGGAA
GTTTAGCACTACTGAATTTGTTATTATGTTGGCTTTTATTTATCAGCCTT
GCCCCCTTAATTGCATATTATAAAAAAAAAAAAA
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