CX287363

Overview
NameCX287363
Unique NameCX287363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 2
Query:   23 VNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKN---ANNGNAYRFYNGLLPKLAANK--GTPLRPGY-IEVYLFGLVDEDAKSIDPG-YFERHWGI 418
            +N YPF +  GN  + P ++  F     IVD  TG  Y N+  A  D + SAL A G   + + + E GWP+ GD +   A   NA R+   L+  + + K   TPL+P   + +Y+F L +E+ K   PG   ER++G+
Sbjct:  200 INAYPFFAYKGNPKEVPLDFVLFQPNQGIVDPATGFHYDNMLFAQIDAVYSALAAAGFKSLRVEISETGWPSKGDDDEVGATPENAKRYNGNLIKMMMSGKKTKTPLKPNNDLSIYVFALFNENLK---PGPTSERNYGL 336          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.387e-14
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   23 VNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGY-IEVYLFGLVDEDAKSIDPGYFERHWGI 418
            VN+YP+ S  GN  D    YA F     +V  G    Y N+FDA  D++ +A+     G + ++V E GWP+DG   A   NA  + + L+ +  A +G+P RP    E Y+F + DE+ KS +    E+H+G+
Sbjct:  175 VNVYPYFSYSGNPRDISLPYALFTSPNVVVRDGQ-YGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGGFGATYDNARVYLDNLVRR--AGRGSPRRPSKPTETYIFAMFDENQKSPE---IEKHFGL 302          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   23 VNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGD---KNANNGNAYRFYNGLLPKLAANK--GTPLRPGY-IEVYLFGLVDEDAKSIDPGYFERHWGI 418
            +N++P+     N  +   ++A F G +   D  TG+ Y N+ D   D+++ A+  +G+  M + + E GWP  GD     AN  NA  +   L+ K++A+   GTP RPG  I  ++F L +E+ KS      +RHWGI
Sbjct:  214 LNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKS--GSGTQRHWGI 350          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = 2
Query:   26 NIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            N+YP+ +  GN  D    +A F  G+  V+   G+ YTN+FDA  D++ +AL+  G   + +++ E GWP+D    A   NA  +  GL+  +    G+P + G +E Y+F + +E+ K  D    E+++G+
Sbjct:  191 NVYPYFAYKGNPRDIQLTFATFVPGSTTVNDN-GLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWPSDQGFGATAQNARAYNQGLINHV--GNGSPKKAGALESYIFAMFNENLK--DGDELEKNFGL 317          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   23 VNIYPFLSLY-GNDDFPFNYAFFDGGTP---IVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKN---ANNGNAYRFYNGLLPKLAANKGTPLRPGY-IEVYLFGLVDEDAKSIDPGYFERHWGI 418
            +N YP+      N  FP +YA F   +P   IVD  T + Y ++FDA  D    +++A+    +P++V E GWP+ G  +   A   NA  F   L+ ++  N G P +P   I  Y++ L +ED +S      ER+WGI
Sbjct:  197 LNAYPYYGYTTANGIFPLDYALFKQLSPVKQIVDPNTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVVTETGWPSSGGSDEAAATVANAETFNTNLIKRVLNNSGPPSQPDIPINTYIYELYNEDKRS--GPVSERNWGI 334          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   26 NIYP-FLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQ-YTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            N+YP F+ +    D   +YA F         GT    Y N+FDA  D++  A++  G  ++ +IV E GWP++G   A   NA  +Y  L+  + +  GTP +PG  IE YLF + DE+ K  +    E+H+G+
Sbjct:  184 NVYPYFVHVSNTADVSLSYALF------TQQGTNSAGYQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGSSAATIENAQTYYRNLINHVKSGAGTPKKPGKTIETYLFAMFDENDKIGE--ITEKHFGL 309          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   23 VNIYPFLS-LYGNDDFPFNYAFFD---GGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDG---DKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPG-YFERHWGI 418
            +N+YP+   +  N   P +YA F         VD+ T + YTNVFDA  D    A+  +   ++P++V E GWP+ G   + +A   NA  + + L+  +    GTP  PG  +  Y++ L +ED +   PG   E++WG+
Sbjct:  194 LNVYPYFDYVQSNGVIPLDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNIPIVVTESGWPSKGGPSEHDATVENANTYNSNLIQHVINKTGTPKHPGTAVTTYIYELYNEDTR---PGPVSEKNWGL 331          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   26 NIYPFLSL-YGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            NIYP+ +  Y   D    YA F   + +V  G    Y N+FDA  D L SAL+    G + ++V E GWP+ G   A   N   + + L+  +    GTP RP   IE YLF + DE+ K  +    E+H+G+
Sbjct:  212 NIYPYFTYAYNPRDISLPYALFTSPSVVVWDGQR-GYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHVKG--GTPKRPNRAIETYLFAMFDENKKQPE---VEKHFGL 338          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 41/136 (30.15%), Postives = 73/136 (53.68%), Query Frame = 2
Query:   23 VNIYPFLSLYGN-DDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGD-MPMIVGEVGWPT-DGDKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            VN+YP+ +   +      +YA       +  +  G++Y N+FDA  D + +A++  G G+ + ++V E GWP+  G   A+  NA  + N L+  +    GTP RPG  +E Y+F + +E+ K   P   E+++G+
Sbjct:  174 VNVYPYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAVEKAGGGESLELVVSETGWPSGGGGYGASVENAAAYINNLVRHVG---GTPRRPGKAVETYIFAMFNENQK---PEGVEQNFGM 303          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDF-PFNYAFFDGGTP---IVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKN---ANNGNAYRFYNGLLPKLAANKGTPLRPGYI-EVYLFGLVDEDAKSIDPGYFERHWGI 418
            +N+YP+     N    P +   F+  TP   +VD  T + YTNV DA  D    ++K +   D+ ++V E GWP+ GD     A   NA  + + L+  +    GTPL P     VY++ L +ED ++  P   E  WG+
Sbjct:  106 MNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRA--PPVSEASWGL 243          
The following BLAST results are available for this feature:
BLAST of CX287363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E1311_ARATH5.503e-1434.29Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E13B_PHAVU9.387e-1435.07Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
EA6_ARATH1.226e-1333.09Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13C_HORVU1.226e-1331.82Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E134_ARATH1.226e-1333.57Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E13K_TOBAC2.091e-1334.33Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E133_ARATH6.084e-1331.91Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13B_HEVBR7.947e-1335.34Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_HORVU1.147e-1130.15Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E131_ARATH2.556e-1132.14Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01008G04SK Veg1 Citrus clementina cDNA clone C01008G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287363 ID=CX287363; Name=CX287363; organism=Citrus clementina; type=EST; length=418bp
CTCGTGCCGAATTCGGCACGAGGTAAACATCTATCCTTTCCTAAGTCTTT
ATGGAAACGATGACTTCCCTTTTAACTATGCTTTCTTTGATGGGGGTACT
CCCATTGTTGATAGCGGAACTGGGATTCAATACACAAATGTTTTTGACGC
CAATTTTGACACTTTGGTTTCGGCTCTGAAAGCTGTTGGCCATGGAGACA
TGCCTATGATTGTAGGAGAGGTGGGTTGGCCAACTGATGGGGACAAGAAT
GCGAATAATGGTAATGCTTATAGATTCTACAATGGACTTTTACCAAAACT
TGCAGCCAATAAAGGCACTCCACTGCGGCCTGGATATATTGAAGTGTACT
TGTTTGGGTTAGTTGATGAGGATGCAAAGAGTATTGATCCTGGATATTTT
GAGCGTCACTGGGGAATC
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