CX287383

Overview
NameCX287383
Unique NameCX287383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15545 contig Ccv1_Contig15545:226..630. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_PICST (H/ACA ribonucleoprotein complex subunit 1 OS=Pichia stipitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.516e-22
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  V+E+ +F+ ACEGD V +  N KIPYFNAPIYL+NKTQIGKVDEI GP+NE +F++K  EG+ A S+
Sbjct:   23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFFTIKPSEGVKADSF 95          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DEBHA (H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.120e-21
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  V+E+ +F+ +CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F++K  EG+ A S+
Sbjct:   23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPSEGVQADSF 95          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.120e-21
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  VVE+ +F+H CEGD V +  N KIPYFNA IYL+NKT++GKVDEI GP+NE +F++K  EG+ A+S+
Sbjct:   32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSF 104          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CRYNE (H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans GN=GAR1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.222e-20
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP  V+E+ SF H  E + +  LT   KIPYFNAPIYLQNKTQIGKVDEI GPINE YF+VKM +G++A+S+
Sbjct:   35 GPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINEVYFTVKMEQGMLASSF 107          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_USTMA (H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP  V  + SF+HA EG+ + + T+ K +PYFNAPIYL+NK+QIGKVDEI GPINE +F+VKM  G+VATS+
Sbjct:   40 GPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPINEVFFTVKMDPGMVATSF 112          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTK-LTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  VVEV  F+H CE D V K +T E ++PYFNAPIYL+NK QIGKVDEIFG + + YFS+K+ E + A+S+
Sbjct:   57 QGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASSF 131          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_RAT (H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.421e-19
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  VV +  F+H CE D V K T E  K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+
Sbjct:   66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSF 140          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_MOUSE (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  VV +  F+H CE D V K T E  K+PYFNAP+YL+NK Q+GKVDEIFG + + YFSVK+ E + A+S+
Sbjct:   75 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSF 149          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  VV +  FLH CE D V K T +  K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+
Sbjct:   64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSF 138          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DANRE (H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.857e-17
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP  VV +  F+H CE + V K   E  K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ + + A+S+
Sbjct:   59 GPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSDNMKASSF 132          
The following BLAST results are available for this feature:
BLAST of CX287383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GAR1_PICST9.516e-2261.64H/ACA ribonucleoprotein complex subunit 1 OS=Pichi... [more]
GAR1_DEBHA2.120e-2158.90H/ACA ribonucleoprotein complex subunit 1 OS=Debar... [more]
GAR1_ASHGO2.120e-2158.90H/ACA ribonucleoprotein complex subunit 1 OS=Ashby... [more]
GAR1_CRYNE5.222e-2064.38H/ACA ribonucleoprotein complex subunit 1 OS=Crypt... [more]
GAR1_USTMA1.984e-1961.64H/ACA ribonucleoprotein complex subunit 1 OS=Ustil... [more]
GAR1_XENTR3.385e-1958.67H/ACA ribonucleoprotein complex subunit 1 OS=Xenop... [more]
GAR1_RAT4.421e-1957.33H/ACA ribonucleoprotein complex subunit 1 OS=Rattu... [more]
GAR1_MOUSE5.773e-1956.00H/ACA ribonucleoprotein complex subunit 1 OS=Mus m... [more]
GAR1_HUMAN5.773e-1957.33H/ACA ribonucleoprotein complex subunit 1 OS=Homo ... [more]
GAR1_DANRE1.857e-1754.05H/ACA ribonucleoprotein complex subunit 1 OS=Danio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008H12SK Veg1 Citrus clementina cDNA clone C01008H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287383 ID=CX287383; Name=CX287383; organism=Citrus clementina; type=EST; length=405bp
ATAACACTAAGCCCCTTGTCGTTTCTCCTAAAATCAACCCAAACCCAGAT
TAAAAAAATGAGACCCCCGAGAGGAGGAGGCGGTTTCAGGGGAGGAAGAG
ACGGAGGCCGCGGTGGAAGGGGCGGCGGCCGTTTTGGTGGAGGCGGCCGT
GGCGGTGGCGGTCGAGGTGGTTTTGGTTTCCGTGACGAAGGACCTCCTGC
CGAAGTTGTTGAGGTATCGTCGTTTCTTCATGCGTGTGAAGGTGATGCTG
TGACAAAGCTCACCAATGAGAAAATACCTTACTTTAATGCTCCAATCTAT
CTGCAAAACAAGACCCAGATAGGGAAAGTTGATGAAATTTTTGGTCCCAT
TAATGAATCTTATTTTTCGGTCAAAATGATGGAAGGTATTGTTGCAACTT
CATAT
back to top