CX287383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_PICST (H/ACA ribonucleoprotein complex subunit 1 OS=Pichia stipitis GN=GAR1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.516e-22 Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP V+E+ +F+ ACEGD V + N KIPYFNAPIYL+NKTQIGKVDEI GP+NE +F++K EG+ A S+ Sbjct: 23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFFTIKPSEGVKADSF 95
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DEBHA (H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii GN=GAR1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.120e-21 Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP V+E+ +F+ +CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F++K EG+ A S+ Sbjct: 23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPSEGVQADSF 95
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.120e-21 Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP VVE+ +F+H CEGD V + N KIPYFNA IYL+NKT++GKVDEI GP+NE +F++K EG+ A+S+ Sbjct: 32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSF 104
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CRYNE (H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans GN=GAR1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.222e-20 Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 Query: 190 GPPAEVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 GPP V+E+ SF H E + + LT KIPYFNAPIYLQNKTQIGKVDEI GPINE YF+VKM +G++A+S+ Sbjct: 35 GPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINEVYFTVKMEQGMLASSF 107
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_USTMA (H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis GN=GAR1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19 Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 190 GPPAEVVEVSSFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 GPP V + SF+HA EG+ + + T+ K +PYFNAPIYL+NK+QIGKVDEI GPINE +F+VKM G+VATS+ Sbjct: 40 GPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPINEVFFTVKMDPGMVATSF 112
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19 Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTK-LTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP VVEV F+H CE D V K +T E ++PYFNAPIYL+NK QIGKVDEIFG + + YFS+K+ E + A+S+ Sbjct: 57 QGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASSF 131
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_RAT (H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.421e-19 Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+ Sbjct: 66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSF 140
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_MOUSE (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19 Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK Q+GKVDEIFG + + YFSVK+ E + A+S+ Sbjct: 75 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSF 149
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19 Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 187 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 +GPP VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+ Sbjct: 64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSF 138
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DANRE (H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.857e-17 Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 Query: 190 GPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405 GPP VV + F+H CE + V K E K+PYFNAP+YL+NK QIGKVDEIFG + + YFSVK+ + + A+S+ Sbjct: 59 GPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSDNMKASSF 132 The following BLAST results are available for this feature:
BLAST of CX287383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287383 ID=CX287383; Name=CX287383; organism=Citrus clementina; type=EST; length=405bpback to top |