CX287383

Overview
NameCX287383
Unique NameCX287383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15545 contig Ccv1_Contig15545:226..630. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CAEBR (Probable H/ACA ribonucleoprotein complex subunit 1-like protein OS=Caenorhabditis briggsae GN=CBG13541 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.426e-17
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP EVV V  F H C+ D V   T+ KIPYFNAPIY +NK Q+GK+DEIFG   E+ FSV + +G+ A+S+
Sbjct:   62 QGPPEEVVLVGVFSHKCQDDIVCNNTSGKIPYFNAPIYFENKEQVGKIDEIFGSPGENGFSVTLSQGVKASSF 134          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CAEEL (Probable H/ACA ribonucleoprotein complex subunit 1-like protein OS=Caenorhabditis elegans GN=Y66H1A.4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.168e-17
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP EVV V  F H C+ D V   T+ KIPYFNAPIY +NK Q+GK+DEIFG   E+ FSV + +G+ A+S+
Sbjct:   54 QGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENGFSVTLSQGVKASSF 126          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DROME (Probable H/ACA ribonucleoprotein complex subunit 1 OS=Drosophila melanogaster GN=CG4038 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 30/72 (41.67%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP  V+ + +++++C+ D V K+  + +PYFNAPI+L+NK Q+GK+DEIFG + +   S+K+ + + A S+
Sbjct:   64 GPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYSVSIKLSDNVYANSF 135          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_DICDI (Probable H/ACA ribonucleoprotein complex subunit 1 OS=Dictyostelium discoideum GN=gar1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.007e-12
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  202 EVVEVSSFLHACEGDAVTKLT-NEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            E +E+  F H CE   V KLT  E++P FN  +   +K  IG VDEIFGPIN+ +FSVK+  G+ ATS+
Sbjct:   61 ENIEIGVFSHVCEEQIVCKLTATEQVPKFNCKVLSSSKNTIGSVDEIFGPINKVFFSVKLDSGVQATSF 129          
The following BLAST results are available for this feature:
BLAST of CX287383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GAR1_CAEBR2.426e-1754.79Probable H/ACA ribonucleoprotein complex subunit 1... [more]
GAR1_CAEEL3.168e-1754.79Probable H/ACA ribonucleoprotein complex subunit 1... [more]
GAR1_DROME5.058e-1541.67Probable H/ACA ribonucleoprotein complex subunit 1... [more]
GAR1_DICDI4.007e-1249.28Probable H/ACA ribonucleoprotein complex subunit 1... [more]

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Properties
Property NameValue
Genbank descriptionC01008H12SK Veg1 Citrus clementina cDNA clone C01008H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287383 ID=CX287383; Name=CX287383; organism=Citrus clementina; type=EST; length=405bp
ATAACACTAAGCCCCTTGTCGTTTCTCCTAAAATCAACCCAAACCCAGAT
TAAAAAAATGAGACCCCCGAGAGGAGGAGGCGGTTTCAGGGGAGGAAGAG
ACGGAGGCCGCGGTGGAAGGGGCGGCGGCCGTTTTGGTGGAGGCGGCCGT
GGCGGTGGCGGTCGAGGTGGTTTTGGTTTCCGTGACGAAGGACCTCCTGC
CGAAGTTGTTGAGGTATCGTCGTTTCTTCATGCGTGTGAAGGTGATGCTG
TGACAAAGCTCACCAATGAGAAAATACCTTACTTTAATGCTCCAATCTAT
CTGCAAAACAAGACCCAGATAGGGAAAGTTGATGAAATTTTTGGTCCCAT
TAATGAATCTTATTTTTCGGTCAAAATGATGGAAGGTATTGTTGCAACTT
CATAT
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