CX287398

Overview
NameCX287398
Unique NameCX287398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CM2A1_DICDI (Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium discoideum GN=chmp2a1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            MSF  G +KTP + L+++KR L K  RE++RE   L+  E++ I +IK+ AK G+    K MA DL++ R Q+E+    K+ L  VS +  T+K+ Q M  AM   TKAM  MN+Q +L  LQK M E+E+Q ++
Sbjct:    1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAKRMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLVQLQKTMMEYEKQTQR 135          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.209e-23
Identity = 51/130 (39.23%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   81 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQN 470
            +F K+  P E+LRE+KR + ++ R IE+E   LQ++EKKL+ EIK++AK G  GA K++A+ LIR R QI      ++Q++G++   Q + +  ++   M+G TKAM  M++ M+     K+M+EF++Q+
Sbjct:    3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQS 132          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   81 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQN 470
            +F K+ TP + LR +KR +  + R IERE   LQ +EK+L++EIKK+AK G   A K++A+ L+R R QI      ++Q++GV+   Q L ++ ++   MKG TKAM  MN+QM      K++++F++Q+
Sbjct:    3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQS 132          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  +++RE  + L  + R I R+R  L+ QEK+L  EIKK AK G   A +V+AK L++ R Q  + Y + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  + L  + R+I R+R  L+ QEK+L  EIKK AK G   A KV+AK L++ R Q  + Y + S++  +S + + + S   M  AM   TK M  +N++M+     + +Q F+++  K
Sbjct:    1 MTSLF-KKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  +++RE  + L  + R I R+R  L+ QEK+L  EIKK AK G   A +V+AK L++ R Q  + Y + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  R L  + R I R+R  L+ QE++L  EIKK AK G   A KV+AK L++ R Q  + Y + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  +++++  + L    R I R+R  L+ QEK+L  EIKK AK G   A KV+AK L++ R Q  + Y + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  R L  + R I R+R  L+ QEK+L  EIKK AK G   A KV+AK L+  R Q  + + + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  R L  + R I R+R  L+ QEK+L  EIKK AK G   A KV+AK L+  R Q  + + + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
The following BLAST results are available for this feature:
BLAST of CX287398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CM2A1_DICDI6.466e-2442.22Charged multivesicular body protein 2a homolog 1 O... [more]
VPS2C_ARATH3.209e-2339.23Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2B_ARATH1.593e-2240.00Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2B_XENTR2.227e-1635.56Charged multivesicular body protein 2b OS=Xenopus ... [more]
CHM2B_DANRE2.227e-1634.81Charged multivesicular body protein 2b OS=Danio re... [more]
CH2BB_XENLA2.227e-1635.56Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2B_CHICK2.909e-1635.56Charged multivesicular body protein 2b OS=Gallus g... [more]
CH2BA_XENLA4.962e-1634.81Charged multivesicular body protein 2b-A OS=Xenopu... [more]
CHM2B_PONAB2.463e-1535.56Charged multivesicular body protein 2b OS=Pongo ab... [more]
CHM2B_HUMAN2.463e-1535.56Charged multivesicular body protein 2b OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC01009B03SK Veg1 Citrus clementina cDNA clone C01009B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287398 ID=CX287398; Name=CX287398; organism=Citrus clementina; type=EST; length=476bp
GAAGCTTAAAAGCATATACCTTCAGATCAGATCATCATCAGATCGGAGAT
CGAAGTCGTTTGATCATCGTCATGAGTTTCCTCTTCGGCAAGAGAAAAAC
TCCCGCGGAACTTCTGCGGGAAAATAAGAGGATGCTGGATAAGTCTATCA
GAGAAATTGAGAGGGAGAGACAGGGCCTACAAACCCAGGAGAAAAAACTT
ATTTCTGAAATTAAGAAATCTGCCAAACAAGGCCAGATGGGAGCTGTGAA
GGTGATGGCAAAAGACCTTATCAGAACACGACATCAGATAGAAAAATTTT
ATAAGCTTAAATCCCAACTCCAGGGTGTATCTCTCCGAATTCAGACACTG
AAATCGACACAAGCAATGGGAGAAGCTATGAAAGGTGTGACAAAGGCAAT
GGGCCAGATGAATAGACAGATGAACTTGCCTTCACTGCAGAAGATTATGC
AAGAATTTGAGAGGCAGAATGAGAAG
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