CX287398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CM2A1_DICDI (Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium discoideum GN=chmp2a1 PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24 Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 MSF G +KTP + L+++KR L K RE++RE L+ E++ I +IK+ AK G+ K MA DL++ R Q+E+ K+ L VS + T+K+ Q M AM TKAM MN+Q +L LQK M E+E+Q ++ Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAKRMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLVQLQKTMMEYEKQTQR 135
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.209e-23 Identity = 51/130 (39.23%), Postives = 86/130 (66.15%), Query Frame = 3 Query: 81 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQN 470 +F K+ P E+LRE+KR + ++ R IE+E LQ++EKKL+ EIK++AK G GA K++A+ LIR R QI ++Q++G++ Q + + ++ M+G TKAM M++ M+ K+M+EF++Q+ Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQS 132
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22 Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = 3 Query: 81 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQN 470 +F K+ TP + LR +KR + + R IERE LQ +EK+L++EIKK+AK G A K++A+ L+R R QI ++Q++GV+ Q L ++ ++ MKG TKAM MN+QM K++++F++Q+ Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQS 132
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16 Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT +++RE + L + R I R+R L+ QEK+L EIKK AK G A +V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16 Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E + L + R+I R+R L+ QEK+L EIKK AK G A KV+AK L++ R Q + Y + S++ +S + + + S M AM TK M +N++M+ + +Q F+++ K Sbjct: 1 MTSLF-KKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16 Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT +++RE + L + R I R+R L+ QEK+L EIKK AK G A +V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16 Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E R L + R I R+R L+ QE++L EIKK AK G A KV+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16 Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT +++++ + L R I R+R L+ QEK+L EIKK AK G A KV+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A KV+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A KV+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134 The following BLAST results are available for this feature:
BLAST of CX287398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287398 ID=CX287398; Name=CX287398; organism=Citrus clementina; type=EST; length=476bpback to top |