CX287398

Overview
NameCX287398
Unique NameCX287398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  R L  + R I R+R  L+ QEK+L  EIKK AK G   A +V+AK L+  R Q  + + + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            M+ LF K+KT  ++++E  R L  + R I R+R  L+ QEK+L  EIKK AK G   A +V+AK L+  R Q  + + + S++  +S + + + S   M  AM    K M  +N++M+     + MQ F+++N K
Sbjct:    1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 40/134 (29.85%), Postives = 75/134 (55.97%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P +L+ E    + K +R I+R+ + +Q +E+K+   IK +AK+GQ     ++AK++I+++  I K Y  K+Q+  V L ++   S   +  A++  T+ M  M   + +P +Q  M++  ++  K
Sbjct:    3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 36/126 (28.57%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  102 PAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            P +LLR+ +R L +  R IER+ + +Q +E+ +   IK++AK+  M + K +AK+++ +R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K
Sbjct:   14 PKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQMAATMQEFSKEMTK 138          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 37/134 (27.61%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P ++  M+E  ++  K
Sbjct:    3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMK 136          
The following BLAST results are available for this feature:
BLAST of CX287398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHM2B_MOUSE5.486e-1534.81Charged multivesicular body protein 2b OS=Mus musc... [more]
CHM2B_BOVIN5.486e-1534.81Charged multivesicular body protein 2b OS=Bos taur... [more]
CHMP3_DANRE6.706e-1329.85Charged multivesicular body protein 3 OS=Danio rer... [more]
CHMP3_PONAB1.951e-1228.36Charged multivesicular body protein 3 OS=Pongo abe... [more]
CHMP3_BOVIN1.951e-1228.36Charged multivesicular body protein 3 OS=Bos tauru... [more]
VP241_ARATH2.548e-1228.57Vacuolar protein sorting-associated protein 24 hom... [more]
CHMP3_RAT2.548e-1228.36Charged multivesicular body protein 3 OS=Rattus no... [more]
CHMP3_MOUSE2.548e-1228.36Charged multivesicular body protein 3 OS=Mus muscu... [more]
CHMP3_HUMAN2.548e-1228.36Charged multivesicular body protein 3 OS=Homo sapi... [more]
CHMP3_MACFA5.677e-1227.61Charged multivesicular body protein 3 OS=Macaca fa... [more]

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Properties
Property NameValue
Genbank descriptionC01009B03SK Veg1 Citrus clementina cDNA clone C01009B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287398 ID=CX287398; Name=CX287398; organism=Citrus clementina; type=EST; length=476bp
GAAGCTTAAAAGCATATACCTTCAGATCAGATCATCATCAGATCGGAGAT
CGAAGTCGTTTGATCATCGTCATGAGTTTCCTCTTCGGCAAGAGAAAAAC
TCCCGCGGAACTTCTGCGGGAAAATAAGAGGATGCTGGATAAGTCTATCA
GAGAAATTGAGAGGGAGAGACAGGGCCTACAAACCCAGGAGAAAAAACTT
ATTTCTGAAATTAAGAAATCTGCCAAACAAGGCCAGATGGGAGCTGTGAA
GGTGATGGCAAAAGACCTTATCAGAACACGACATCAGATAGAAAAATTTT
ATAAGCTTAAATCCCAACTCCAGGGTGTATCTCTCCGAATTCAGACACTG
AAATCGACACAAGCAATGGGAGAAGCTATGAAAGGTGTGACAAAGGCAAT
GGGCCAGATGAATAGACAGATGAACTTGCCTTCACTGCAGAAGATTATGC
AAGAATTTGAGAGGCAGAATGAGAAG
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