CX287398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15 Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A +V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15 Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A +V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+ + MQ F+++N K Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 134
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13 Identity = 40/134 (29.85%), Postives = 75/134 (55.97%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P +L+ E + K +R I+R+ + +Q +E+K+ IK +AK+GQ ++AK++I+++ I K Y K+Q+ V L ++ S + A++ T+ M M + +P +Q M++ ++ K Sbjct: 3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12 Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P +Q M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4) HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12 Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P +Q M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12 Identity = 36/126 (28.57%), Postives = 73/126 (57.94%), Query Frame = 3 Query: 102 PAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 P +LLR+ +R L + R IER+ + +Q +E+ + IK++AK+ M + K +AK+++ +R + + Y+ K+Q+ +S+ + +++ + +G K + M +N M P + MQEF ++ K Sbjct: 14 PKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQMAATMQEFSKEMTK 138
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12 Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P +Q M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12 Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P +Q M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12 Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P +Q M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 136
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12 Identity = 37/134 (27.61%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 81 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476 LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P ++ M+E ++ K Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMK 136 The following BLAST results are available for this feature:
BLAST of CX287398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287398 ID=CX287398; Name=CX287398; organism=Citrus clementina; type=EST; length=476bpback to top |