CX287402

Overview
NameCX287402
Unique NameCX287402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10709 contig Ccv1_Contig10709:10..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.313e-28
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLK-KKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG+    G    R+  Y+G VT  VI+ C VAA+GG +FGYD+GISGGVTSM+ FL KFF  V  + KK  H+  YCK+DNQ L  FTSSLYLA LVASF+AS +TR +GR+ S+
Sbjct:    1 MAGGAFVSEGGGGGRS--YEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSM 115          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.784e-27
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  178 QYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHA--HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            +++ K+TP VI++C +AA GG +FGYD+G+SGGVTSM  FL+KFF  VY K       ++NYCKYDNQGL  FTSSLYLAGL A+F AS  TR  GRR ++
Sbjct:   14 EFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTM 114          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.784e-27
Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = 1
Query:  175 EQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENN-YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            ++Y GK+T  V V C VAA+GG IFGYDIGISGGVT+MD+F +KFF  VY K+K  H++N YC++D+  L  FTSSLYLA L +S VAS VTR +GR+ S+
Sbjct:   13 KEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISM 113          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.248e-27
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:  181 YQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDV--YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            Y+G+VT  V++ C VAA+GG +FGYDIGISGGV SM+ FL KFF DV   ++ K   E  YCKYDN+ L  FTSSLYLA L ASF+AS +TR +GR+ S+
Sbjct:   16 YEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSM 115          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.160e-27
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHA-HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG+    G        Y+G VT  VI+ C VAA+GG +FGYD+GISGGVTSM+ FL KFF +V  +   A  E  YCK+DNQ L  FTSSLYLA L +SFVAS VTR YGR+ S+
Sbjct:    1 MAGGAFVSEGGGG--GNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISM 115          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.908e-26
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG L    +    A     K+T +V+++C VAA  G IFGYDIGISGGVT+M  FL+KFF  V  K   A  N YC YD+Q L AFTSSLY+AGLVAS VAS +T  YGRR ++
Sbjct:    1 MAGGGLA---LDVSSAGNIDAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKKASEAKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTM 113          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: HUP3_CHLKE (H(+)/hexose cotransporter 3 OS=Chlorella kessleri GN=HUP3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENN-YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG++  +G A  R+ +YQG +T  V++   VAA GG + GYD G++GGV SM+ F +KFF DVY KK+   E + YC YDN  L  F SSL+LAGL++   ++ +TR++GR+AS+
Sbjct:    1 MAGGAIVASGGAS-RSSEYQGGLTAYVLLVALVAACGGMLLGYDNGVTGGVASMEQFERKFFPDVYEKKQQIVETSPYCTYDNPKLQLFVSSLFLAGLISCIFSAWITRNWGRKASM 116          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: HUP1_CHLKE (H(+)/hexose cotransporter 1 OS=Chlorella kessleri GN=HUP1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.473e-23
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENN-YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG +            Y+G +T  V++  F+AA GG + GYD G++GGV S++AF KKFF DV+ KK+  HE++ YC YDN  L  F SSL+LAGLV+   AS +TR++GR+ ++
Sbjct:    1 MAGGGVVVVSGRGLSTGDYRGGLTVYVVMVAFMAACGGLLLGYDNGVTGGVVSLEAFEKKFFPDVWAKKQEVHEDSPYCTYDNAKLQLFVSSLFLAGLVSCLFASWITRNWGRKVTM 117          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP3_ARATH (Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 9.336e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  187 GKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVY------LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            GK+T  V+ +C +AA+GG IFGYDIG+SGGV SM  FLK+FF  VY       +++    N+YC +++Q L +FTSSLY++GL+A+ +AS VTR +GR+ SI
Sbjct:   18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSI 119          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: HUP2_CHLKE (H(+)/hexose cotransporter 2 OS=Chlorella kessleri GN=HUP2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.152e-19
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  127 MAGGSLGP-AGVAKERAEQY---QGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENN--YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG  GP A     RA QY   +G +   + +    A  GG +FGYDIG++GGVTSM  FL+KFF  +Y + +   ++   YC YD+Q L  FTSS +LAG+  SF A  V R +GR+ ++
Sbjct:    1 MAGG--GPVASTTTNRASQYGYARGGLNWYIFIVALTAGSGGLLFGYDIGVTGGVTSMPEFLQKFFPSIYDRTQQPSDSKDPYCTYDDQKLQLFTSSFFLAGMFVSFFAGSVVRRWGRKPTM 120          
The following BLAST results are available for this feature:
BLAST of CX287402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
STP10_ARATH3.313e-2857.26Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP13_ARATH4.784e-2758.42Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP12_ARATH4.784e-2759.41Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP11_ARATH6.248e-2759.00Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP9_ARATH8.160e-2756.41Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP5_ARATH6.908e-2655.17Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]
HUP3_CHLKE1.103e-2347.86H(+)/hexose cotransporter 3 OS=Chlorella kessleri ... [more]
HUP1_CHLKE5.473e-2346.15H(+)/hexose cotransporter 1 OS=Chlorella kessleri ... [more]
STP3_ARATH9.336e-2350.98Sugar transport protein 3 OS=Arabidopsis thaliana ... [more]
HUP2_CHLKE2.152e-1943.44H(+)/hexose cotransporter 2 OS=Chlorella kessleri ... [more]

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Properties
Property NameValue
Genbank descriptionC01009B07SK Veg1 Citrus clementina cDNA clone C01009B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287402 ID=CX287402; Name=CX287402; organism=Citrus clementina; type=EST; length=476bp
AAAAAAAAAAAAAACAAGTAATTTTCAATCTCATGCCAGTTTGAGCGAGG
AAACAAGCTTTTGTTTTTCAGTGTTTTGTGTCTGGTTTTTGAGAGGACAG
AAAGAAGGAAGAAGAGGATCTTGAAAATGGCAGGAGGGTCTCTTGGTCCA
GCGGGGGTGGCAAAGGAGAGAGCTGAGCAGTATCAAGGGAAGGTCACACC
TTCTGTGATTGTTGCGTGCTTTGTTGCTGCCATTGGAGGTTCCATTTTTG
GGTATGATATTGGAATTTCAGGAGGAGTTACATCTATGGATGCATTTCTT
AAGAAATTCTTCCATGATGTGTACCTAAAGAAGAAGCATGCACACGAAAA
CAACTATTGCAAGTATGACAATCAGGGGCTTGCAGCATTTACGTCTTCTC
TATACCTTGCTGGATTGGTTGCATCCTTTGTAGCATCTCCAGTTACTAGG
GATTATGGGCGTCGTGCTAGTATAAT
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