CX287418

Overview
NameCX287418
Unique NameCX287418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2536..2888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE YLG+     W  +     AFEKF  K+ E+E  ID RN D  L+NR G   +PY LL P SE GVTG+G+P
Sbjct:  781 DEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE YLG+   P W  D     AF+KF  KL E+E  +  RN D KLRNR+G   +PY LL P S+ G+T +G+P
Sbjct:  783 DELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  783 DEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE YLG+   P W +D    AAFE+F  KL ++E  I  RN +  L NR G    PY LL P SE G+TGKG+P
Sbjct:  782 DEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE YLG+   P W  D     AF++F  KL ++E  +  RN D KLRNR G   +PY LL P S+ G+T +G+P
Sbjct:  779 DEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIP 852          
BLAST of CX287418 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 DEEYLGKEIE-PAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 222
            DE+YLG+ IE   W  D V   AF++F  KL E+E  +  RN D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  787 DEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIP 861          
The following BLAST results are available for this feature:
BLAST of CX287418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LOX1_ARATH5.248e-1248.65Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_PEA1.169e-1147.30Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_SOLTU1.527e-1148.65Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXA_SOLLC1.994e-1148.65Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX3_SOYBN3.402e-1144.59Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_LENCU3.402e-1148.00Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01009C12SK Veg1 Citrus clementina cDNA clone C01009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287418 ID=CX287418; Name=CX287418; organism=Citrus clementina; type=EST; length=353bp
GATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATGGCGTGAGGATCC
GGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTG
AAGGGATTATTGATGCAAGGAATGCAGATCCCAAGTTGAGGAATAGAAAT
GGAGCTGGGATGGTGCCATATGAGCTCTTGAAGCCATTTTCGGAACCTGG
TGTTACAGGAAAAGGAGTTCCGTACAGCATCTCTATCTAGAGTTGAAAAT
GTTGTTGCAATCGCTCGAATGTTGTATCAATAAAAACTTTTGAGAATGAG
TTCAAGAATGAATCAAATAAATTGCAGTTAATGTTAAAAAAAAAAAAAAA
AAA
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