CX287423

Overview
NameCX287423
Unique NameCX287423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            ++  S+  +  S+ A+         + Q+WL   LT   TC D + S  LS +N  +         L +L +     +  +   + P +    + L    G  P WVS+++RKL+++    I AN +VAQDGTG+Y+T++EA++AA   +  R+VIY
Sbjct:  121 LLDQSVDLVSDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELTSFSLSTKNGTV---------LDELITRAKVALAMLASVTTPNDEVLRQGL----GKMPYWVSSRDRKLMESSGKDIIANRVVAQDGTGDYQTLAEAVAAAPDKNKTRYVIY 264          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 48/149 (32.21%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   14 SLKRLEKSLLALQNSPTKNK-----HDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALV-NRIDRASYPKNSTYNRRLDEEQGD---FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA 433
            +L  L K++  L+  P K        D++T + AA+T Q TC D  +     A   V   +S    ++ ++ SN LA++ N  D       ++ NR+L EE      +P W+S  +R+LLQ+  +  NV+VA DG+GN++TV+ +++AA
Sbjct:  148 TLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHD--DANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAASVAAA 294          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 48/149 (32.21%), Postives = 80/149 (53.69%), Query Frame = 2
Query:   14 SLKRLEKSLLALQNSPTKNK-----HDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALV-NRIDRASYPKNSTYNRRLDEEQGD---FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA 433
            +L  L K++  L+  P K        D++T + AA+T Q TC D  +     A   V   +S    ++ ++ SN LA++ N  D       ++ NR+L EE      +P W+S  +R+LLQ+  +  N +VA DG+GN++TV+ A++AA
Sbjct:  148 TLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHD--DANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSSSVTPNAVVAADGSGNFKTVAAAVAAA 294          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 51/161 (31.68%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQ--NSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP----RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            MM +S  R+  S+  L+  N   ++  ++ TWL + LT   TC +S++ + ++++ +++K   Q  D +S+        V+ +      K    NR        FP+W++A +RKLL++     ++ ANV+VA+DGTG ++TV+EA++AA   S  R+VIY
Sbjct:  129 MMDVSKDRMMSSMEELRGGNYNLESYSNVHTWLSSVLTNYMTCLESISDVSVNSK-QIVKP--QLEDLVSRARVALAIFVSVLPARDDLKMIISNR--------FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIY 278          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 2
Query:   50 QNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI---DRASYP---KNSTY----NRRLDEEQGD-----FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            Q S  K+  D++T + +A+T Q TC D  +     A  +V K + +   ++  + SN LA++  +   D A++    K+ST+    NR+L E  GD     +P W+S  +R+LLQ   I A+  VA DG+G++ TV+ A++AA   S  RFVI+
Sbjct:  157 QKSLRKHADDLKTLISSAITNQGTCLDGFSYD--DADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKADATVADDGSGDFTTVAAAVAAAPEKSNKRFVIH 308          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   56 SPTKNKHDIQTWLGAALTFQQTCKDSVNSL---GLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRL--DEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            S  ++  D+ TWL +A+T   TC D  + +   G   +++VI  +      LS++ SN LA+     +         NR+L   EE  + PNW+  ++R+LL  P   I A++ V++DG+G ++T++EAI  A   S  RFVIY
Sbjct:  166 SGDESHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKD----LSEMVSNCLAIFAGKVKDLSGVPVVNNRKLLGTEETEELPNWLKREDRELLGTPTSAIQADITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIY 305          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA-----SGNRFVIY 457
            D QTWL  ALT  +TC+   + L ++   + I  I      +S L SN LA+   +  A    N+T N++       FP W+S K+++LL+A  + AN++VA+DG+G++ TV  AI  A     +  RFVIY
Sbjct:  136 DAQTWLSTALTNTETCRRGSSDLNVT---DFITPIVSNTK-ISHLISNCLAVNGALLTAGNKGNTTANQK------GFPTWLSRKDKRLLRA--VRANLVVAKDGSGHFNTVQAAIDVAGRRKVTSGRFVIY 255          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKI-SQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQG--DFPNWVSAKNRKLLQAPRIN-ANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            D++TW+ AAL+ Q TC D     G    N +IKKI +  +  +     N L +V+       PK            G   FP+WV   +RKLLQ   I  A+ +VA DGTGN+ T+S+A+ AA   S  R+VI+
Sbjct:  118 DLRTWISAALSNQDTCLD-----GFEGTNGIIKKIVAGGLSKVGTTVRNLLTMVHSPPSKPKPKPIKAQTMTKAHSGFSKFPSWVKPGDRKLLQTDNITVADAVVAADGTGNFTTISDAVLAAPDYSTKRYVIH 246          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            ++  S+  +  S+ A+         + Q+WL   LT   TC D ++S   +  N            L +L S     +  +   + P +      L    G  P+WVS+++RKL+++    I AN +VA+DGTG YRT++EA++AA   S  R+VIY
Sbjct:  126 LLDQSVDLVSDSIAAIDKRTHSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGT---------NLDELISRAKVALAMLASVTTPNDDVLRPGL----GKMPSWVSSRDRKLMESSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIY 269          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQA--PRINANVIVAQDGTGNYRTVSEAISA 430
            D+ TWL AALT Q+TCK S++    S   E I   S   +    LT++    V+   ++S   N T  R+L  +  DFP WVS+ +RKLL+A    +  + +VA DG+G + +V+EA+++
Sbjct:  131 DVHTWLSAALTNQETCKQSLSEKS-SFNKEGIAIDSFARNLTGLLTNSLDMFVSDKQKSSSSSNLTGGRKLLSDH-DFPTWVSSSDRKLLEASVEELRPHAVVAADGSGTHMSVAEALAS 248          
The following BLAST results are available for this feature:
BLAST of CX287423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PME3_SOLLC2.656e-1329.94Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME3_CITSI3.469e-1332.21Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI3.469e-1332.21Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME18_ARATH3.469e-1331.68Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME2_ARATH4.531e-1334.42Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME61_ARATH1.318e-1233.33Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME59_ARATH2.249e-1236.36Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME32_ARATH2.249e-1236.57Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME22_SOLLC5.009e-1229.94Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME35_ARATH6.542e-1236.67Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC01009D05SK Veg1 Citrus clementina cDNA clone C01009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287423 ID=CX287423; Name=CX287423; organism=Citrus clementina; type=EST; length=458bp
GATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTATTAGCCCTAC
AAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGCT
GCGTTGACTTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTCT
CTCAGCGAGAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTATT
TGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAGG
GCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAACA
AGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAGG
CCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAAT
TATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTGT
GATTTATG
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