CX287423

Overview
NameCX287423
Unique NameCX287423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2938 contig Ccv1_Contig2938:365..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 47/157 (29.94%), Postives = 78/157 (49.68%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            ++ +S+  +  S+ A+         + Q+WL   LT   TC D ++S   +  N            L +L S     +  +   + P +      L    G  P+WVS+++RKL+++    I AN +VA+DGTG YRT++EA++AA   S  R+VIY
Sbjct:  126 LLDLSVDLVCDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGT---------NLDELISRAKVALAMLASVTTPNDEVLRPGL----GKMPSWVSSRDRKLMESSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIY 269          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 2
Query:   74 HDIQTWLGAALTFQQTCKD----SVNSLGLSARNE----VIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            H+++  L AA+T  +TC D    S N   L+  +     V + + + +  +S   S+ LA++  I             ++ E+ G FP WVS  +R LLQ P      N++VAQ+GTGNY T+ EAISAA   S  RFVIY
Sbjct:  107 HNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIP-------GHIPGKVKEDVG-FPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAISAAPNSSETRFVIY 239          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI-DRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEA---ISAASGNRFVIY 457
            D+ TWL +A+T   TC D+++    ++   + +K+   M   ++ TSN LA+V ++  + S  +     RRL      FPNWV    R+LLQA  +  +V VA DG+G+ RTV+EA   +       FVIY
Sbjct:  565 DLITWLSSAVTDIGTCGDTLDEDNYNS--PIPQKLKSAMVNSTEFTSNSLAIVAQVLKKPSKSRIPVQGRRL-LNSNSFPNWVRPGVRRLLQAKNLTPHVTVAADGSGDVRTVNEAVWRVPKKGKTMFVIY 692          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 53/179 (29.61%), Postives = 94/179 (52.51%), Query Frame = 2
Query:   14 SLKRLEKSLLALQNSPTKN---KH--DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI---DRASYP---KNSTYNRRLDEEQGD-----------------FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            +L  L +++  L   PTK    +H  D++T + +A+T Q+TC D  +     A  +V K + +   ++  + SN LA++  +   D A++    K ++ NR+L EE  +                 +P W+SA +R+LLQ   + A+  VA DG+G ++TV+ A++AA   S  R+VI+
Sbjct:  137 TLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHD--DADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSGVKADATVAADGSGTFKTVAAAVAAAPENSNKRYVIH 313          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 43/122 (35.25%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   80 IQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALV----NRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAIS 427
            ++ WL A ++ +QTC D       +A  E IKK    +    QLT N LA+V    N + +   P+ ++  RRL  ++  FP+W+ A+ R+LL AP   +  +++VAQDG+G Y+T++EA++
Sbjct:  158 LRIWLSATISHEQTCLDGFQGTQGNA-GETIKKA---LKTAVQLTHNGLAMVTEMSNYLGQMQIPEMNS--RRLLSQE--FPSWMDARARRLLNAPMSEVKPDIVVAQDGSGQYKTINEALN 271          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   14 SLKRLEKSLLALQNSPTKNK------HDIQTWLGAALTFQQTCKDSVNSLGLS----ARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRL------DEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            +L RL  ++ A+ +   K         D++TWL A +T  +TC DS++ L  +    A + + + +   M   ++ TSN LA+V++I  A        +RR        ++  DF  W     R+LLQ   +  +V VA DGTG+  TV+EA++     S   FVIY
Sbjct:  149 ALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALSDLGIPIHRRRRLMSHHHQQSVDFEKWA---RRRLLQTAGLKPDVTVAGDGTGDVLTVNEAVAKVPKKSLKMFVIY 312          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 2
Query:    5 MSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDR--ASYPKNSTY----NRRLDEEQGDFPNWVSAKNRKLLQAPRINA---NVIVAQDGTGNYRTVSEAISAASG---NRFVIY 457
            +  S+KR+  S +   N+  K   D+ +WL A +++Q+TC D      L        +I +  +    LTSN LA++  +D   +S PK  T      R   +E     +W+S K R++L+A  + A   N  VA+DG+GN+ T++ A+ A       R+ IY
Sbjct:  175 LGTSMKRINDSEV---NNFAKIVPDLDSWLSAVMSYQETCVDGFEEGKLKT------EIRKNFNSSQVLTSNSLAMIKSLDGYLSSVPKVKTRLLLEARSSAKETDHITSWLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKAMPAKYQGRYTIY 328          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARN-----EVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            ++  S+     S+ A+         + Q+WL   LT   TC D ++S   +  N     E+I +    +  L+ LT+    +   +                   G  P+WVS+ +RKL+++    I AN +VAQDGTG+Y+T++EA++AA   S  R+VIY
Sbjct:  122 LLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLEELISRAKVALAMLASLTTQDEDVFMTV------------------LGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIY 265          
The following BLAST results are available for this feature:
BLAST of CX287423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PME21_SOLLC6.542e-1229.94Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME40_ARATH2.486e-1136.17Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME26_ARATH2.486e-1135.11Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME3_ARATH3.247e-1129.61Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME28_ARATH3.247e-1135.25Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME1_ARATH3.247e-1130.54Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME45_ARATH9.447e-1130.06Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME1_SOLLC9.447e-1129.01Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]

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Properties
Property NameValue
Genbank descriptionC01009D05SK Veg1 Citrus clementina cDNA clone C01009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287423 ID=CX287423; Name=CX287423; organism=Citrus clementina; type=EST; length=458bp
GATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTATTAGCCCTAC
AAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGCT
GCGTTGACTTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTCT
CTCAGCGAGAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTATT
TGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAGG
GCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAACA
AGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAGG
CCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAAT
TATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTGT
GATTTATG
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