CX287428

Overview
NameCX287428
Unique NameCX287428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECAP_DROME (NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.496e-32
Identity = 75/179 (41.90%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  103 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAG 633
            E  L+V  EV +YKIPPR ++ GY+ G+W   +  WTGR+R+V+      ++LED  SG LFA C +   PG    ++E V DSSRYFV++++D  G+ AF+GLGF +R+++FD NVAL DH K+V+ + E+   E +E    +D+        KEGETI+IN++     G+   S  G
Sbjct:    4 ESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGV---AIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVKNQ-EQIEKEKTEPKQELDL------GFKEGETIKINMRITKKDGSEGSSRTG 172
The following BLAST results are available for this feature:
BLAST of CX287428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NECAP_DROME2.496e-3241.90NECAP-like protein CG9132 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC01009D10SK Veg1 Citrus clementina cDNA clone C01009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287428 ID=CX287428; Name=CX287428; organism=Citrus clementina; type=EST; length=636bp
GTCATTGTTCTTCAATTCAGTTAAGTCACCTCAAATTCACTCGCATTTCT
TCTTCATTTCCCAAACAAAACGACCATGTCGTTCGACGACGAAGAATCGT
TAGAGCACACGCTCCTTGTCGTCCGCGAAGTCTGCGTTTACAAAATCCCC
CCGCGTACAACCTCTGGCGGCTACAAATGCGGCGAATGGTTGCAGTCCGA
CAAGATCTGGACAGGCCGCCTCCGGGTCGTATCCTGTAAGGACCGGTGTG
AGATCCGGTTAGAGGATCCCAACTCCGGCGAGCTCTTCGCAGCTTGTTTC
GTTCAACCCGGCCAGCGTGAGAACTCTGTGGAGACCGTCCTCGACTCGTC
CCGATATTTCGTGCTCAAGATCGAGGACGGTACAGGAAAACACGCGTTTA
TTGGATTAGGCTTTAATGAGAGAAATGAAGCGTTTGATTTCAACGTCGCG
TTGTCGGATCACGAGAAATACGTGAGACGAGAACTCGAGAAGGAGAGTGG
CGAGATGAGTGAGAGCGATGGTCATATCGATATACATCCCGCAGTTAATC
ATAGATTAAAGGAAGGAGAAACGATCCGGATCAATGTGAAGCCCAAACCG
ACTAGTGGAACTGGCATGCTTTCAGCTGCAGGGCTG
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