CX287430

Overview
NameCX287430
Unique NameCX287430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   21 ELTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            + TG    SI  ++ L+ L+LA+N L  L          L IL++ +N F G++P+  SSL   + + L  N FSG +  L   P LE+L++A N FTG +P S++   NLQ     GN L  GP P
Sbjct:  128 QFTGSAQYSISMMAPLKYLNLAHNQLKQLAI-DFTKLTSLSILDLSSNAFIGSLPNTCSSLTSAKSIYLQNNQFSGTIDILATLP-LENLNIANNRFTGWIPDSLKGI-NLQ---KDGNLLNSGPAP 248          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSI---RTFRNLQFFDFSGNSLLEGPIP 401
            L G + PS+ RL+ L  L L  N L   +P  I   K +E + + NN FSG +P  + ++  L+  D S N  +G +       NLE L+L +N+  G +P SI   +T   L+ F    N+ L G +P
Sbjct:  224 LVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESLNLFENMLEGPLPESITRSKTLSELKLF----NNRLTGVLP 348          

HSP 2 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 3
Query:   21 ELTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLG-FLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            +L+G +      L  L  L L++NS    +P  I+  K L  L +  N+FSG+IP+++ SL  +  +  + N FSG +   L     L  L L+KN  +G++P  +R ++NL   + + N  L G IP
Sbjct:  414 KLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNH-LSGEIP 540          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 36/127 (28.35%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   21 ELTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            +  G +  S+  +++L  L+L  N+L   L        KLE +++ +NQ +G +P   ++L  L+ L L  N F G++  L+  P ++ +++A N FTG +P  ++   NL   +  GN    G  P
Sbjct:  128 DFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFANLTGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTGWIPNELKNIGNL---ETGGNKWSSGRAP 251          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 45/150 (30.00%), Postives = 69/150 (46.00%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKY------------------------FPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            +TG +   I  L  L+ L L++N +   +P +IV  K L  L + +N  +G +P    +L  LR  D S NS  G+L  L++                        F +L  LSL +N  TGK+P  + ++   ++ D S N  LEG IP
Sbjct:  209 ITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNNSLEGDLSELRFLKNLVSLGMFENRLTGEIPKEFGDFKSLAALSLYRNQLTGKLPRRLGSWTAFKYIDVSEN-FLEGQIP 357          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 3
Query:   24 LTGVLSPSI-GRLS-ELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            ++G LSP I  +LS  L  L+L++N +   +P +IV  K L+ L +++N F G +  DL  L  L+ LDL GN     +  L     L  +SL  N F  K+P  I+   NLQ  D S N    G IP
Sbjct:  117 ISGSLSPKIITKLSPSLESLNLSSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGPEVPSLP--SKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNE-FTGSIP 241          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 47/155 (30.32%), Postives = 70/155 (45.16%), Query Frame = 3
Query:   18 RELTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCK-----------------------KLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSG----NLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            + LTG++ P   +L  L+ L L+ NSL   +P +    +                        L  L+++ NQFSG IP D+  L+ L  L L  N+F+G     LG LK   NL  + ++ N FTG +P  I  +  +      G   L+GPIP
Sbjct:  100 QNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLK---NLTDMRISDNNFTGPIPDFISNWTRILKLQMHGCG-LDGPIP 250          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 51/178 (28.65%), Postives = 79/178 (44.38%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGT-IPS-----------------------DLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIPVMRRVGPSGFQYPKRYVLAETTTNGRSN 485
            ++G + P +G L  +  + L NN+L   LPP++ +  +L IL + NN F GT IP                        DLSS+  L  LDLS N  +G++   K   ++  + L+ N  TG +PT+      LQ    + N+ L G IP   R+           ++ +   NG SN
Sbjct:  191 ISGQIPPELGSLPSIVHILLDNNNLSGYLPPELSNMPRLLILQLDNNHFDGTTIPQSYGNMSKLLKMSLRNCSLQGPVPDLSSIPNLGYLDLSQNQLNGSIPAGKLSDSITTIDLSNNSLTGTIPTNFSGLPRLQKLSLANNA-LSGSIP--SRIWQERELNSTESIIVDLRNNGFSN 365          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIPVM--RRVGPSGFQYPK 443
            L+G L  SI  +  L  ++++ NSL   +     D K L  L++ +N FSG +PS LS++  L VL +  N  +G++  L   P L+ L++A N F G +P  + + + L +   S +++   P P    ++  PSG + PK
Sbjct:  131 LSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLPSSLSTVSTLSVLYVQNNQLTGSIDVLSGLP-LKTLNVANNHFNGSIPKELSSIQTLIYDGNSFDNVPASPQPERPGKKETPSGSKKPK 271          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL-GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            L G +S  IG+L  LR+LSL NN +   +P  +   K L  + + NN+ SG+IP  L +   L+ LDLS N  +G +   L     L  L+L+ N  +G +P S+     L F D   N+ L G IP
Sbjct:  106 LGGTISEKIGQLGSLRKLSLHNNVIAGSVPRSLGYLKSLRGVYLFNNRLSGSIPVSLGNCPLLQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNN-LSGSIP 231          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   51 GRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL-GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIPVMR 410
            GR++ LR   L    L   LP  I +  KLE L+ + N  +G +P D ++L  LR L L GN+FSG +  FL   PN+  ++LA+N F G++P ++ +   L       N  L GPIP ++
Sbjct:   63 GRVTALR---LPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQ-LTGPIPEIK 179          
The following BLAST results are available for this feature:
BLAST of CX287430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SRF7_ARATH1.309e-1137.01Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
RLK5_ARATH1.309e-1133.33Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
SRF4_ARATH2.916e-1128.35Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
IKU2_ARATH2.916e-1130.00Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
Y2278_ARATH3.809e-1136.72Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH3.809e-1130.32Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH3.809e-1128.65Probable LRR receptor-like serine/threonine-protei... [more]
SRF8_ARATH3.809e-1130.99Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
IMK2_ARATH3.809e-1136.22Probably inactive leucine-rich repeat receptor-lik... [more]
Y5659_ARATH4.974e-1136.36Probable inactive receptor kinase At5g16590 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC01009E01SK Veg1 Citrus clementina cDNA clone C01009E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287430 ID=CX287430; Name=CX287430; organism=Citrus clementina; type=EST; length=486bp
AGCTCGTGTTTGTGCCTAGAGAGCTTACTGGGGTTCTTTCCCCGTCAATC
GGACGGCTGTCAGAGCTCAGAGAGCTCTCTCTGGCTAACAACAGCCTCGT
TGACCTGCTGCCACCCCAAATCGTTGACTGCAAGAAACTTGAAATTCTTA
ACGTTCAAAATAATCAGTTTTCTGGCACAATCCCCTCCGATTTGTCTTCT
TTAATTCGTCTTCGTGTTCTCGATCTTTCTGGGAATAGTTTTTCGGGGAA
TTTGGGTTTCCTGAAATATTTTCCAAACTTGGAACATCTCTCTTTAGCTA
AAAATCTGTTCACCGGAAAAGTCCCAACTTCCATACGTACATTTCGCAAT
CTCCAATTCTTCGACTTCTCCGGAAACAGTCTCCTTGAAGGTCCAATACC
AGTGATGAGAAGGGTTGGACCCTCAGGGTTTCAATACCCAAAACGATACG
TTTTGGCTGAGACTACCACCAATGGAAGAAGCAATG
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