CX287431

Overview
NameCX287431
Unique NameCX287431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.903e-27
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLS 480
            MEC FG+ G  + IL +D  A  SI+  KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R + PY VN+LL G+D  T  P LY+IDY+ T   V  AA G G Y SLS
Sbjct:    1 MECSFGITGKDYVILASDMGAGRSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLS 142          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.052e-25
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            M+ V G+  +   ++    +A   I V K  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S+
Sbjct:    1 MDIVLGIRVEDCTLVATSKAATRGISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSL 144          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 1
Query:   58 AMECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYF 471
            AME + G+ G  F +L +DT    S++  K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R  + Y V +LLAGYD   GP L+YID       ++ A  G+GS F
Sbjct:    2 AMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMF 140          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.153e-22
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            M+ + G+      IL +  +    I V K ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S+
Sbjct:    1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSL 143          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   88 DGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGY--------DKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            D   +  A  +A + I +    EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+        D  TG  LYY+DY+ TL +V     GYG+ F  +M
Sbjct:   12 DFVLVAAAGLNAFYYIKI-TDTEDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAM 153          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 39/137 (28.47%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYF 471
            M+   G+ G  FAI+ ADT    SILV K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF
Sbjct:    1 MDSSIGIKGRNFAIVAADTKISSSILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYF 136          
The following BLAST results are available for this feature:
BLAST of CX287431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB2_CRYNE2.903e-2747.18Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_PICGU6.052e-2543.75Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_DROME2.543e-2340.29Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_YEAST2.153e-2237.76Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_TRYBB7.166e-1839.86Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_ENCCU2.916e-1128.47Probable proteasome subunit beta type-2 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionC01009E03SK Veg1 Citrus clementina cDNA clone C01009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287431 ID=CX287431; Name=CX287431; organism=Citrus clementina; type=EST; length=483bp
CGGCACGAGGCACAACAAAATCAAATCAAAACAGATCCGACAACAACAGA
ACAGTAAGCAATGGAGTGCGTATTTGGTCTTGTCGGCGACGGCTTCGCAA
TCTTAGTGGCCGACACGTCGGCAGTCCACAGTATCTTGGTTCATAAATCG
AACGAGGACAAGATCATGGTCCTCGACTCTCACAAACTCATCGCCGCCAG
TGGCGAACCCGGTGACCGTGTTCAATTTACGGAGTTCATTCAGAAGAATG
TGTCGTTGTATCAATTTCGTAACGGAATTCCATTGACTACTGCTGCGGCG
GCGAACTTTACCCGAGGAGAGCTTGCTACTGCTCTGAGAAAGAGCCCTTA
CATGGTTAACATCCTTCTAGCTGGGTATGACAAGGAGACAGGACCATCTC
TTTACTACATTGACTACATTGCAACCCTTCACAAAGTTGATAAGGCAGCT
TTTGGTTATGGATCCTATTTTTCGCTCTCCATG
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