CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_PINTH (ATP synthase subunit alpha, chloroplastic OS=Pinus thunbergii GN=atpA PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 5.557e-75
Identity = 142/153 (92.81%), Postives = 147/153 (96.08%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM YTIVVAETADSPATLQYLAPYTGA LAEYFMY+++HT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGS+TALPIVETQ+GDVSAYIPTN ISITDGQIF SADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMAYTIVVAETADSPATLQYLAPYTGATLAEYFMYKKQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSVTALPIVETQAGDVSAYIPTNAISITDGQIFSSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_NEPOL (ATP synthase subunit alpha, chloroplastic OS=Nephroselmis olivacea GN=atpA PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.258e-75
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM YTI+V+ETADSPATLQYLAPYTGAALAEYFMY  RHTL+IYDDLSKQAQAYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL   LGEGSMTALP++ETQ GDVSAYIPTNVISITDGQIFLSAD+FNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMRYTIIVSETADSPATLQYLAPYTGAALAEYFMYSGRHTLVIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDALGEGSMTALPVIETQGGDVSAYIPTNVISITDGQIFLSADIFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CHLVU (ATP synthase subunit alpha, chloroplastic OS=Chlorella vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.617e-74
Identity = 138/153 (90.20%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTI+VA TADSPATLQYL+PYTGAALAEYFMY  RHTL+IYDDL+KQAQAYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALP+VETQ GDVSAYIPTNVISITDGQIFLSAD+FNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMDYTIIVAATADSPATLQYLSPYTGAALAEYFMYTGRHTLVIYDDLTKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDKLGSGSMTALPVVETQEGDVSAYIPTNVISITDGQIFLSADIFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CHLAT (ATP synthase subunit alpha, chloroplastic OS=Chlorokybus atmophyticus GN=atpA PE=3 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 1.617e-74
Identity = 138/153 (90.20%), Postives = 148/153 (96.73%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE A++PATLQYLAPYTGA LAEYFMY+ RHTL+IYDDLSKQAQAYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL + LGEGSMTALP+VETQ+GDVSAYIPTNVISITDGQIFLSADLFNAG+RPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAENANAPATLQYLAPYTGATLAEYFMYKGRHTLVIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSTALGEGSMTALPVVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGLRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ANEMR (ATP synthase subunit alpha, plastid OS=Aneura mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.617e-74
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+ YTIVV E A+SPATLQYLAPYTGAALAEYFMYR++HTLI+YDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  SQLGEGSMTA PI+ETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 ALKYTIVVTENANSPATLQYLAPYTGAALAEYFMYRKQHTLIVYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSNSQLGEGSMTAPPIIETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_OSTTA (ATP synthase subunit alpha, chloroplastic OS=Ostreococcus tauri GN=atpA PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.758e-74
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTI+V+ETADSPATLQYLAPYTGA+LAEYFMY  R TLIIYDDLSKQAQAYRQMSLLL+RPPGREAYPGDVFYLHSRLLERAAKL   LGEGSMTALPI+ETQ GDVSAYIPTNVISITDGQ+FLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMDYTIIVSETADSPATLQYLAPYTGASLAEYFMYTGRATLIIYDDLSKQAQAYRQMSLLLKRPPGREAYPGDVFYLHSRLLERAAKLSDALGEGSMTALPIIETQGGDVSAYIPTNVISITDGQVFLSADLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_EUGGR (ATP synthase subunit alpha, chloroplastic OS=Euglena gracilis GN=atpA PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 3.602e-74
Identity = 137/153 (89.54%), Postives = 147/153 (96.08%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTI+VAE ADS ATLQYLAPYTGAALAEYFMY  +HTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG+GSMTALPIVETQ+GDVSAYIPTNVISITDGQ+FLSAD+FN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIIVAENADSSATLQYLAPYTGAALAEYFMYNGKHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGQGSMTALPIVETQAGDVSAYIPTNVISITDGQVFLSADIFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CYAPA (ATP synthase subunit alpha, cyanelle OS=Cyanophora paradoxa GN=atpA PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.369e-73
Identity = 135/153 (88.24%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT++VA  AD PATLQYLAPYTGA++AEYFMY+ +HTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  QLGEGSMTALPIVETQ+GDV AYIPTNVISITDGQIFLSADLFN+G+RPAINVGISVSRVGSA
Sbjct:  218 ALDYTVIVAANADDPATLQYLAPYTGASIAEYFMYKGQHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSPQLGEGSMTALPIVETQAGDVCAYIPTNVISITDGQIFLSADLFNSGLRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA1_ACAM1 (ATP synthase subunit alpha 1 OS=Acaryochloris marina (strain MBIC 11017) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.983e-73
Identity = 135/153 (88.24%), Postives = 145/153 (94.77%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT+VVA  A+ PATLQYLAPYTGAA+AEYFMY  +HTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAG+RPAIN GISVSRVGSA
Sbjct:  218 ALDYTVVVAANANDPATLQYLAPYTGAAIAEYFMYNGKHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSPELGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGLRPAINAGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_MESVI (ATP synthase subunit alpha, chloroplastic OS=Mesostigma viride GN=atpA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.159e-72
Identity = 135/153 (88.24%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM YTI+VAE A++PATLQYLAPYTGA LAE+FMY  RHTL+IYDDLSKQAQAYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL + LGEGSMTALPI+ETQ+GDV+AYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMAYTIIVAENANAPATLQYLAPYTGATLAEFFMYSGRHTLVIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSNALGEGSMTALPIIETQAGDVAAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_PINTH5.557e-7592.81ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_NEPOL7.258e-7590.85ATP synthase subunit alpha, chloroplastic OS=Nephr... [more]
ATPA_CHLVU1.617e-7490.20ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_CHLAT1.617e-7490.20ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_ANEMR1.617e-7491.50ATP synthase subunit alpha, plastid OS=Aneura mira... [more]
ATPA_OSTTA2.758e-7490.85ATP synthase subunit alpha, chloroplastic OS=Ostre... [more]
ATPA_EUGGR3.602e-7489.54ATP synthase subunit alpha, chloroplastic OS=Eugle... [more]
ATPA_CYAPA1.369e-7388.24ATP synthase subunit alpha, cyanelle OS=Cyanophora... [more]
ATPA1_ACAM13.983e-7388.24ATP synthase subunit alpha 1 OS=Acaryochloris mari... [more]
ATPA_MESVI1.159e-7288.24ATP synthase subunit alpha, chloroplastic OS=Mesos... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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