CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CYAME (ATP synthase subunit alpha, chloroplastic OS=Cyanidioschyzon merolae GN=atpA PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.416e-70
Identity = 133/153 (86.93%), Postives = 143/153 (93.46%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTIVV   AD  A+LQYLAPYTGAA+AE+FMY+ + TL+IYDDL+KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMDYTIVVTANADDAASLQYLAPYTGAAIAEHFMYQGKATLVIYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNKELGGGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SYNP6 (ATP synthase subunit alpha OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpA PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 5.383e-70
Identity = 129/153 (84.31%), Postives = 142/153 (92.81%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT+VVA  A  PATLQYLAPY GAA+AEYFMY+ + TL+IYDDL+KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL   LG GSMTALP++ETQ+GDVSAYIPTNVISITDGQIFLS+DLFN+G+RPAINVGISVSRVGSA
Sbjct:  218 ALDYTVVVAANASEPATLQYLAPYAGAAIAEYFMYKGKATLVIYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDALGGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLSSDLFNSGLRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_TRIEI (ATP synthase subunit alpha OS=Trichodesmium erythraeum (strain IMS101) GN=atpA PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 9.182e-70
Identity = 128/153 (83.66%), Postives = 141/153 (92.16%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT++VA  A  PATLQYLAPYTGA +AEYFMY+ + TL+IYDDLSKQAQAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAG RPA+N GISVSRVGSA
Sbjct:  218 ALDYTVIVAANASDPATLQYLAPYTGATIAEYFMYKGKATLVIYDDLSKQAQAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDKLGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGFRPAVNAGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_GUITH (ATP synthase subunit alpha, chloroplastic OS=Guillardia theta GN=atpA PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 9.182e-70
Identity = 129/153 (84.31%), Postives = 141/153 (92.16%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT +VA  AD PATLQY+APYTGAA+AEYFMY  + TL+IYDDLSKQA AYR+MSLLLRRPPGREA+PGDVFYLHSRLLERAAKL  +LG GSMTALP++ETQ+GDVSAYIPTNVISITDGQIFLS DLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 ALDYTCIVAANADDPATLQYIAPYTGAAIAEYFMYNGQATLVIYDDLSKQASAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDKLGGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLSGDLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_EMIHU (ATP synthase subunit alpha, chloroplastic OS=Emiliania huxleyi GN=atpA PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 9.182e-70
Identity = 130/153 (84.97%), Postives = 141/153 (92.16%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+ YTI+VA  AD PATLQY+APYTGAALAEYFMY+ + T+I+YDDL+KQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL   LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFLS DLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 ALGYTIIVAANADEPATLQYIAPYTGAALAEYFMYKGKATVIVYDDLTKQASAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDALGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSGDLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CHLRE (ATP synthase subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii GN=atpA PE=1 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 1.199e-69
Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYTI+V   A+ PATLQYLAPYTGA LAEYFMY  R TL IYDDLSKQAQAYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL + LGEGSMTALPIVETQ GDVSAYIPTNVISITDGQIFL+A LFN+G+RPAINVGISVSRVGSA
Sbjct:  218 ALDYTIIVMANANEPATLQYLAPYTGATLAEYFMYTGRPTLTIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNNALGEGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLAAGLFNSGLRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_MICAN (ATP synthase subunit alpha OS=Microcystis aeruginosa (strain NIES-843) GN=atpA PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.566e-69
Identity = 128/153 (83.66%), Postives = 141/153 (92.16%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYT+VVA  A+ PATLQY+APYTGA++AEYFMY+ + TL+IYDDL+KQAQAYRQ+SLL+RRPPGREAYPGDVFYLHSRLLERAAKL   LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFLS DLFNAG RPAIN GISVSRVGSA
Sbjct:  218 AMDYTVVVAANANDPATLQYIAPYTGASIAEYFMYKGKATLVIYDDLTKQAQAYRQLSLLMRRPPGREAYPGDVFYLHSRLLERAAKLSDALGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSTDLFNAGFRPAINAGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_GALSU (ATP synthase subunit alpha, chloroplastic OS=Galdieria sulphuraria GN=atpA PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.566e-69
Identity = 129/153 (84.31%), Postives = 143/153 (93.46%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+ YTI+VA  AD PA+LQY+APYT A+LAEYFMY+ + TL+IYDDL+KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFLS+DLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 ALGYTIIVAANADEPASLQYIAPYTAASLAEYFMYKGKATLVIYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNQKLGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSSDLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CYACA (ATP synthase subunit alpha, chloroplastic OS=Cyanidium caldarium GN=atpA PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 4.557e-69
Identity = 128/153 (83.66%), Postives = 144/153 (94.12%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+ YT+V+A  A+ PATLQY+APYTGAA+AE+FMY+   TLIIYDDL+KQAQAYRQMSLLL+RPPGREAYPGDVFYLHSRLLERAAKL ++LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAGIRP+INVGISVSRVGSA
Sbjct:  218 ALKYTVVIAANANEPATLQYIAPYTGAAIAEHFMYKGLATLIIYDDLTKQAQAYRQMSLLLKRPPGREAYPGDVFYLHSRLLERAAKLNNELGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPSINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SYNPW (ATP synthase subunit alpha OS=Synechococcus sp. (strain WH7803) GN=atpA PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 5.951e-69
Identity = 125/153 (81.70%), Postives = 141/153 (92.16%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYT++VA  A  PA LQYLAPYTGA++AEYFMY+ + TL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFY HSRLLERAAKL   +G+GSMTALPI+ETQ+GDVSAYIPTNVISITDGQ+FLS+DLFN+G+RPAINVGISVSRVG A
Sbjct:  218 ALDYTVIVAANASDPAALQYLAPYTGASIAEYFMYKGKATLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYCHSRLLERAAKLSDAMGKGSMTALPIIETQAGDVSAYIPTNVISITDGQVFLSSDLFNSGLRPAINVGISVSRVGGA 370
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CYAME2.416e-7086.93ATP synthase subunit alpha, chloroplastic OS=Cyani... [more]
ATPA_SYNP65.383e-7084.31ATP synthase subunit alpha OS=Synechococcus sp. (s... [more]
ATPA_TRIEI9.182e-7083.66ATP synthase subunit alpha OS=Trichodesmium erythr... [more]
ATPA_GUITH9.182e-7084.31ATP synthase subunit alpha, chloroplastic OS=Guill... [more]
ATPA_EMIHU9.182e-7084.97ATP synthase subunit alpha, chloroplastic OS=Emili... [more]
ATPA_CHLRE1.199e-6986.27ATP synthase subunit alpha, chloroplastic OS=Chlam... [more]
ATPA_MICAN1.566e-6983.66ATP synthase subunit alpha OS=Microcystis aerugino... [more]
ATPA_GALSU1.566e-6984.31ATP synthase subunit alpha, chloroplastic OS=Galdi... [more]
ATPA_CYACA4.557e-6983.66ATP synthase subunit alpha, chloroplastic OS=Cyani... [more]
ATPA_SYNPW5.951e-6981.70ATP synthase subunit alpha OS=Synechococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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