CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SPHAL (ATP synthase subunit alpha OS=Sphingopyxis alaskensis GN=atpA PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.833e-64
Identity = 120/153 (78.43%), Postives = 133/153 (86.93%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+Y+IVVA TA  PA LQ+LAPYTG  + E+F     H +I+YDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ S  G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  +LFNAGIRPAINVG+SVSRVGSA
Sbjct:  225 AMEYSIVVAATASEPAPLQFLAPYTGCTMGEFFRDNGMHAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNSDNGSGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETNLFNAGIRPAINVGLSVSRVGSA 377          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_HELMI (ATP synthase subunit alpha OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpA PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.284e-63
Identity = 119/153 (77.78%), Postives = 133/153 (86.93%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTIVV+ TA  PA L Y+APY G A+ EYF+Y+ +H L IYDDLSKQA AYR++SLLLRRPPGREAYPGDVFYLHSRLLERAAKL  + G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL +DLF +GIRPAIN GISVSRVG A
Sbjct:  217 AMDYTIVVSATASEPAPLLYIAPYAGCAMGEYFLYKGQHALCIYDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEHGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFFSGIRPAINAGISVSRVGGA 369          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SYMTH (ATP synthase subunit alpha OS=Symbiobacterium thermophilum GN=atpA PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.677e-63
Identity = 118/153 (77.12%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV+ TA  PA LQ+LAPY G A+ EYF     H LI+YDDLSK A AYR+MSLL+RRPPGREAYPGDVFYLHSRLLERAAK+  + G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  DLFNAG+RPAINVGISVSRVG A
Sbjct:  217 AMEYTIVVSATASDPAPLQFLAPYAGCAMGEYFRDNGMHALIVYDDLSKHAVAYREMSLLMRRPPGREAYPGDVFYLHSRLLERAAKMSDEYGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGVRPAINVGISVSRVGGA 369          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_FUSNN (ATP synthase subunit alpha OS=Fusobacterium nucleatum subsp. nucleatum GN=atpA PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.677e-63
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 3
Query:    6 MDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            MDYTI+VA TA   A LQY+APY+G A+ EYFM +  H LIIYDDLSK A AYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL + LFN+G RPAIN GISVSRVG A
Sbjct:  218 MDYTIIVAATASEAAPLQYMAPYSGVAIGEYFMEKGEHVLIIYDDLSKHAVAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLESQLFNSGFRPAINAGISVSRVGGA 369          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_BREBN (ATP synthase subunit alpha OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=atpA PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.190e-63
Identity = 115/153 (75.16%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A++YTI+V+ TA  PA + YLAPYTG  +AEYFMY+  H L +YDDLSKQA AYR+MSLLLRRPPGREAYPGDVFYLHSRLLERAAKL   LG GS+TALP +ETQ+GD+SAYIPTNVISITDGQIFL  DLFNAG RPA+N G+SVSRVG +
Sbjct:  218 ALEYTIIVSATASDPAPMLYLAPYTGVTMAEYFMYKGGHVLCVYDDLSKQAAAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDDLGAGSITALPFIETQAGDISAYIPTNVISITDGQIFLETDLFNAGQRPAVNTGLSVSRVGGS 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ZYMMO (ATP synthase subunit alpha OS=Zymomonas mobilis GN=atpA PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.861e-63
Identity = 118/153 (77.12%), Postives = 133/153 (86.93%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+Y+IVVA TA  PA LQYL PY+  ++ EYF   ++H LI+YDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+  ++G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  DLF  GIRPAINVG+SVSRVGSA
Sbjct:  225 AMEYSIVVAATASEPAPLQYLVPYSACSMGEYFRDNKQHALIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFYQGIRPAINVGLSVSRVGSA 377          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CAMHC (ATP synthase subunit alpha OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=atpA PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.861e-63
Identity = 118/153 (77.12%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTIVV+  A  PA LQYLAPY G  + EYF    RH LIIYDDLSK A AYR+MSL+LRRPPGREAYPGDVFYLHSRLLERA+KL  +LG GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL + LFN+GIRPAINVG+SVSRVG +
Sbjct:  219 AMDYTIVVSAGASEPAALQYLAPYAGCTMGEYFRDNSRHALIIYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYLHSRLLERASKLSDELGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESGLFNSGIRPAINVGLSVSRVGGS 371          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CAMJR (ATP synthase subunit alpha OS=Campylobacter jejuni (strain RM1221) GN=atpA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.880e-63
Identity = 117/153 (76.47%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV   A  PA LQYLAPYTG  + E+F    +H LI+YDDLSK A AYR+MSL+LRRPPGREAYPGDVFYLHSRLLERA+KL  +LG GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  DLFN+GIRPAINVG+SVSRVG A
Sbjct:  217 AMEYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGA 369          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CAMJJ (ATP synthase subunit alpha OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=atpA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.880e-63
Identity = 117/153 (76.47%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV   A  PA LQYLAPYTG  + E+F    +H LI+YDDLSK A AYR+MSL+LRRPPGREAYPGDVFYLHSRLLERA+KL  +LG GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  DLFN+GIRPAINVG+SVSRVG A
Sbjct:  217 AMEYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGA 369          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CAMJE (ATP synthase subunit alpha OS=Campylobacter jejuni GN=atpA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.880e-63
Identity = 117/153 (76.47%), Postives = 131/153 (85.62%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV   A  PA LQYLAPYTG  + E+F    +H LI+YDDLSK A AYR+MSL+LRRPPGREAYPGDVFYLHSRLLERA+KL  +LG GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  DLFN+GIRPAINVG+SVSRVG A
Sbjct:  217 AMEYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGA 369          
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SPHAL9.833e-6478.43ATP synthase subunit alpha OS=Sphingopyxis alasken... [more]
ATPA_HELMI1.284e-6377.78ATP synthase subunit alpha OS=Heliobacterium modes... [more]
ATPA_SYMTH1.677e-6377.12ATP synthase subunit alpha OS=Symbiobacterium ther... [more]
ATPA_FUSNN1.677e-6378.29ATP synthase subunit alpha OS=Fusobacterium nuclea... [more]
ATPA_BREBN2.190e-6375.16ATP synthase subunit alpha OS=Brevibacillus brevis... [more]
ATPA_ZYMMO2.861e-6377.12ATP synthase subunit alpha OS=Zymomonas mobilis GN... [more]
ATPA_CAMHC2.861e-6377.12ATP synthase subunit alpha OS=Campylobacter homini... [more]
ATPA_CAMJR4.880e-6376.47ATP synthase subunit alpha OS=Campylobacter jejuni... [more]
ATPA_CAMJJ4.880e-6376.47ATP synthase subunit alpha OS=Campylobacter jejuni... [more]
ATPA_CAMJE4.880e-6376.47ATP synthase subunit alpha OS=Campylobacter jejuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
back to top