CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_NASOF (ATP synthase subunit alpha, chloroplastic OS=Nasturtium officinale GN=atpA PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.846e-78
Identity = 148/153 (96.73%), Postives = 151/153 (98.69%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETAD+PA LQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADAPAALQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CALFG (ATP synthase subunit alpha, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpA PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.846e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSPLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_BARVE (ATP synthase subunit alpha, chloroplastic OS=Barbarea verna GN=atpA PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.846e-78
Identity = 148/153 (96.73%), Postives = 151/153 (98.69%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETAD+PA LQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADAPAALQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_WHEAT (ATP synthase subunit alpha, chloroplastic OS=Triticum aestivum GN=atpA PE=3 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SORBI (ATP synthase subunit alpha, chloroplastic OS=Sorghum bicolor GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SACOF (ATP synthase subunit alpha, chloroplastic OS=Saccharum officinarum GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSJ (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. japonica GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSI (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. indica GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSA (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ORYNI (ATP synthase subunit alpha, chloroplastic OS=Oryza nivara GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_NASOF1.846e-7896.73ATP synthase subunit alpha, chloroplastic OS=Nastu... [more]
ATPA_CALFG1.846e-7897.39ATP synthase subunit alpha, chloroplastic OS=Calyc... [more]
ATPA_BARVE1.846e-7896.73ATP synthase subunit alpha, chloroplastic OS=Barba... [more]
ATPA_WHEAT2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Triti... [more]
ATPA_SORBI2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Sorgh... [more]
ATPA_SACOF2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_ORYSJ2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSI2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSA2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYNI2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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