CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_BACC4 (ATP synthase subunit alpha OS=Bacillus cereus (strain B4264) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 8.614e-60
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYTIVV  +A  PA L YLAPY G  + E FMY  +H L++YDDLSKQA AYR++SLLLRRPPGREAYPGDVFYLHSRLLERAAKL    G GS+TALP +ETQ+GDVSAYIPTNVISITDGQIFL +DLF +G+RPAI+ G SVSRVG +
Sbjct:  217 ALDYTIVVTASASQPAPLLYLAPYAGVTMGEEFMYNGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDAKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLQSDLFFSGVRPAIDAGTSVSRVGGS 369
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_THERP (ATP synthase subunit alpha OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 114/153 (74.51%), Postives = 128/153 (83.66%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM++TIVVA TA  PA LQY+APY G A+ E  M    H LI+YDDLSK A AYRQ+SLL+RRPPGREAYPGD+FYLHSRLLERAA+L   LG G++TALPIVETQ+ DVSAYIPTNVISITDGQI+L  DLF AGIRPAINVG+SVSRVG A
Sbjct:  217 AMEHTIVVAATASDPAALQYIAPYAGCAMGEEIMESGGHALIVYDDLSKHAWAYRQVSLLMRRPPGREAYPGDIFYLHSRLLERAARLRDDLGGGTLTALPIVETQANDVSAYIPTNVISITDGQIYLEPDLFYAGIRPAINVGLSVSRVGGA 369
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_THELT (ATP synthase subunit alpha OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 109/153 (71.24%), Postives = 128/153 (83.66%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YT VV  +A  PA +QY+APY G A+ EYFMY  +  L++YDDLSK A AYRQ+SLLLRRPPGREAYPGD+FYLHSRLLERAA+L  ++G GS+TALPIVETQ+ DVSAYIPTNVISITDGQI+L   LF +G RPAINVG+SVSRVG +
Sbjct:  218 AMEYTTVVVASASDPAPIQYIAPYAGCAMGEYFMYNSKDALVVYDDLSKHAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAARLDDKMGGGSLTALPIVETQANDVSAYIPTNVISITDGQIYLEPGLFYSGFRPAINVGLSVSRVGGS 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_RICB8 (ATP synthase subunit alpha OS=Rickettsia bellii (strain OSU 85-389) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTI+V+ TA   A LQ++APY   ++ EYF    +H LIIYDDLSK A AYRQ+SLLLRRPPGREAYPGDVFYLHSRLLE AAK+  + G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL ++LF  GIRPA+NVGISVSRVGSA
Sbjct:  225 AMDYTIIVSATASEAAALQFVAPYAACSMGEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLECAAKMSEEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYKGIRPAVNVGISVSRVGSA 377
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_RHOSR (ATP synthase subunit alpha OS=Rhodococcus sp. (strain RHA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 108/153 (70.59%), Postives = 133/153 (86.93%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YT +VA  A   A  ++LAPYTG+A+ +++MY+ +H L+++DDL+KQA+AYR +SLLLRRPPGREAYPGDVFYLHSRLLER+AKL   LG GS+TALPI+ET++ DVSAYIPTNVISITDGQ+FL +DLFN G+RPAINVGISVSRVG A
Sbjct:  228 AMEYTTIVAAPASDSAGFKWLAPYTGSAIGQHWMYQGKHVLVVFDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERSAKLSDALGGGSLTALPIIETKANDVSAYIPTNVISITDGQVFLESDLFNKGVRPAINVGISVSRVGGA 380
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_RHOOB (ATP synthase subunit alpha OS=Rhodococcus opacus (strain B4) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 108/153 (70.59%), Postives = 133/153 (86.93%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YT +VA  A   A  ++LAPYTG+A+ +++MY+ +H L+++DDL+KQA+AYR +SLLLRRPPGREAYPGDVFYLHSRLLER+AKL   LG GS+TALPI+ET++ DVSAYIPTNVISITDGQ+FL +DLFN G+RPAINVGISVSRVG A
Sbjct:  228 AMEYTTIVAAPASDSAGFKWLAPYTGSAIGQHWMYQGKHVLVVFDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERSAKLSDALGGGSLTALPIIETKANDVSAYIPTNVISITDGQVFLESDLFNKGVRPAINVGISVSRVGGA 380
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_RHOE4 (ATP synthase subunit alpha OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 108/153 (70.59%), Postives = 133/153 (86.93%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YT +VA  A   A  ++LAPYTG+A+ +++MY+ +H L+++DDL+KQA+AYR +SLLLRRPPGREAYPGDVFYLHSRLLER+AKL   LG GS+TALPI+ET++ DVSAYIPTNVISITDGQ+FL +DLFN G+RPAINVGISVSRVG A
Sbjct:  228 AMEYTTIVAAPASDSAGFKWLAPYTGSAIGQHWMYQGKHVLVVFDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERSAKLSDALGGGSLTALPIIETKANDVSAYIPTNVISITDGQVFLESDLFNKGVRPAINVGISVSRVGGA 380
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_PARDP (ATP synthase subunit alpha OS=Paracoccus denitrificans (strain Pd 1222) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 116/153 (75.82%), Postives = 126/153 (82.35%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM YT VVA TA  PA +QYLAPY+  A+ EYF       LIIYDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKL    G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  +LF  GIRPA+N G+SVSRVGSA
Sbjct:  226 AMAYTTVVAATASDPAPMQYLAPYSATAMGEYFRDNGMDALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKLNEANGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETELFFQGIRPAVNTGLSVSRVGSA 378
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A++Y+IV+A TA  PA +QYLAP+ G A+ EYF     H LI YDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  + G GS+TALP++ETQ  DVSA+IPTNVISITDGQIFL  +LF  GIRPA+NVG+SVSRVGS+
Sbjct:  225 ALEYSIVIAATASDPAPMQYLAPFAGCAMGEYFRDNSMHALIGYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDENGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSS 377
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_METRJ (ATP synthase subunit alpha OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.125e-59
Identity = 109/153 (71.24%), Postives = 129/153 (84.31%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A++Y+IV+A TA   A +Q++AP+ G A+ EYF     H +I+YDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+G   G GS+TALP++ETQ+ DVSAYIPTNVISITDGQIFL  DLF  G+RPA+NVG+SVSRVGS+
Sbjct:  226 ALEYSIVIAATASDAAPMQFIAPFAGCAMGEYFRDNGMHAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAGSLTALPVIETQANDVSAYIPTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSS 378
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_BACC48.614e-6072.55ATP synthase subunit alpha OS=Bacillus cereus (str... [more]
ATPA_THERP1.125e-5974.51ATP synthase subunit alpha OS=Thermomicrobium rose... [more]
ATPA_THELT1.125e-5971.24ATP synthase subunit alpha OS=Thermotoga lettingae... [more]
ATPA_RICB81.125e-5973.86ATP synthase subunit alpha OS=Rickettsia bellii (s... [more]
ATPA_RHOSR1.125e-5970.59ATP synthase subunit alpha OS=Rhodococcus sp. (str... [more]
ATPA_RHOOB1.125e-5970.59ATP synthase subunit alpha OS=Rhodococcus opacus (... [more]
ATPA_RHOE41.125e-5970.59ATP synthase subunit alpha OS=Rhodococcus erythrop... [more]
ATPA_PARDP1.125e-5975.82ATP synthase subunit alpha OS=Paracoccus denitrifi... [more]
ATPA_OCHA41.125e-5973.20ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_METRJ1.125e-5971.24ATP synthase subunit alpha OS=Methylobacterium rad... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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