CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ACOCL (ATP synthase subunit alpha, chloroplastic OS=Acorus calamus GN=atpA PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 5.370e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ACOAM (ATP synthase subunit alpha, chloroplastic OS=Acorus americanus GN=atpA PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 5.370e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SACHY (ATP synthase subunit alpha, chloroplastic OS=Saccharum hybrid GN=atpA PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 7.014e-78
Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKFNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_PSINU (ATP synthase subunit alpha, chloroplastic OS=Psilotum nudum GN=atpA PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 7.014e-78
Identity = 147/153 (96.08%), Postives = 151/153 (98.69%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  220 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 372
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ILLOL (ATP synthase subunit alpha, chloroplastic OS=Illicium oligandrum GN=atpA PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 7.014e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 9.160e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAY GDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYLGDVFYLHSRLLERAAKLSSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CERDE (ATP synthase subunit alpha, chloroplastic OS=Ceratophyllum demersum GN=atpA PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 9.160e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADS ATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSSATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ZYGCR (ATP synthase subunit alpha, chloroplastic OS=Zygnema circumcarinatum GN=atpA PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.563e-77
Identity = 144/153 (94.12%), Postives = 152/153 (99.35%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTIVVAETA++PATLQYLAPYTGAALAEYFMY+ +HTL++YDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMDYTIVVAETANAPATLQYLAPYTGAALAEYFMYKGQHTLVVYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_LACSA (ATP synthase subunit alpha, chloroplastic OS=Lactuca sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.563e-77
Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_DRIGR (ATP synthase subunit alpha, chloroplastic OS=Drimys granadensis GN=atpA PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.563e-77
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLS+DLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSHLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAINVGISVSRVGSA 370
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ACOCL5.370e-7896.73ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_ACOAM5.370e-7896.73ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_SACHY7.014e-7896.73ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_PSINU7.014e-7896.08ATP synthase subunit alpha, chloroplastic OS=Psilo... [more]
ATPA_ILLOL7.014e-7896.73ATP synthase subunit alpha, chloroplastic OS=Illic... [more]
ATPA_TOBAC9.160e-7896.73ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_CERDE9.160e-7896.73ATP synthase subunit alpha, chloroplastic OS=Cerat... [more]
ATPA_ZYGCR1.563e-7794.12ATP synthase subunit alpha, chloroplastic OS=Zygne... [more]
ATPA_LACSA1.563e-7796.73ATP synthase subunit alpha, chloroplastic OS=Lactu... [more]
ATPA_DRIGR1.563e-7796.08ATP synthase subunit alpha, chloroplastic OS=Drimy... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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