CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_PINKO (ATP synthase subunit alpha, chloroplastic OS=Pinus koraiensis GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.728e-76
Identity = 143/153 (93.46%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMY+++HT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGS+TALPIVETQ+GDVSAYIPTN ISITDGQIFLSADLFNAGIRPAINVG+SVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYKKQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSLTALPIVETQAGDVSAYIPTNAISITDGQIFLSADLFNAGIRPAINVGLSVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_MORIN (ATP synthase subunit alpha, chloroplastic OS=Morus indica GN=atpA PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 2.947e-76
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGA LAEYFMYRE+HT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGATLAEYFMYREQHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_NANDO (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica GN=atpA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 3.849e-76
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETAD+PATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADAPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CHAGL (ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum GN=atpA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 3.849e-76
Identity = 142/153 (92.81%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AMDYTI+V+E A+SPATLQYLAPYTGAALAE+FMY+ RHTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMDYTIIVSEPANSPATLQYLAPYTGAALAEFFMYKGRHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_HUPLU (ATP synthase subunit alpha, chloroplastic OS=Huperzia lucidula GN=atpA PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 8.574e-76
Identity = 143/153 (93.46%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETA+SPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALP+VETQ+GDVSAYIPTNVISITDGQ FLSAD  NAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETANSPATLQYLAPYTGAALAEYFMYRQQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPVVETQAGDVSAYIPTNVISITDGQTFLSADSSNAGIRPAINVGISVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_GNEPA (ATP synthase subunit alpha, chloroplastic OS=Gnetum parvifolium GN=atpA PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.120e-75
Identity = 141/153 (92.16%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV E ADSPATLQYLAPYTG ALAEYFMY+++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGS+TALPIVETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAGIRPAINVG+SVSRVGSA
Sbjct:  219 AMEYTIVVVEPADSPATLQYLAPYTGTALAEYFMYKKKHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSQLGEGSITALPIVETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAINVGLSVSRVGSA 371
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CHAVU (ATP synthase subunit alpha, chloroplastic OS=Chara vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.120e-75
Identity = 142/153 (92.81%), Postives = 149/153 (97.39%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+ YTIVVAETA+S ATLQYLAPYTGA+LAEYFMY+ RHTL++YDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  221 ALSYTIVVAETANSSATLQYLAPYTGASLAEYFMYKGRHTLVVYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 373
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_WELMI (ATP synthase subunit alpha, chloroplastic OS=Welwitschia mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 1.462e-75
Identity = 141/153 (92.16%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVV E ADSPATLQYLAPYTGAALAEYFMY+++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGS+TALPIVETQ+GDVSAYIPTNVISITDGQIFLS+DLFNAGIRPAI+VG+SVSRVGSA
Sbjct:  218 AMEYTIVVVEPADSPATLQYLAPYTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSQLGEGSLTALPIVETQAGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAIDVGLSVSRVGSA 370
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ANGEV (ATP synthase subunit alpha, chloroplastic OS=Angiopteris evecta GN=atpA PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.495e-75
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE A+SPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  SQLGEGSMTA PIVETQ+GDVSAYIPTNVISITDGQIFLSAD FNAGIRPAINVGISVSRVGSA
Sbjct:  220 AMEYTIVVAEAANSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTASPIVETQAGDVSAYIPTNVISITDGQIFLSADSFNAGIRPAINVGISVSRVGSA 372
[Close]
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_LEPTE (ATP synthase subunit alpha, chloroplastic OS=Leptosira terrestris GN=atpA PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 4.255e-75
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 3 
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A+DYTI+VA TADSPATLQYLAPYTGAALAEYFMY  RHTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL  QLG GSMTALPIVETQ GDVSAYIPTNVISITDGQIFLSAD+FN+G+RPA+NVGISVSRVGSA
Sbjct:  220 ALDYTIIVAATADSPATLQYLAPYTGAALAEYFMYTGRHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSADIFNSGLRPAVNVGISVSRVGSA 372
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_PINKO1.728e-7693.46ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_MORIN2.947e-7694.77ATP synthase subunit alpha, chloroplastic OS=Morus... [more]
ATPA_NANDO3.849e-7694.12ATP synthase subunit alpha, chloroplastic OS=Nandi... [more]
ATPA_CHAGL3.849e-7692.81ATP synthase subunit alpha, chloroplastic OS=Chaet... [more]
ATPA_HUPLU8.574e-7693.46ATP synthase subunit alpha, chloroplastic OS=Huper... [more]
ATPA_GNEPA1.120e-7592.16ATP synthase subunit alpha, chloroplastic OS=Gnetu... [more]
ATPA_CHAVU1.120e-7592.81ATP synthase subunit alpha, chloroplastic OS=Chara... [more]
ATPA_WELMI1.462e-7592.16ATP synthase subunit alpha, chloroplastic OS=Welwi... [more]
ATPA_ANGEV2.495e-7593.46ATP synthase subunit alpha, chloroplastic OS=Angio... [more]
ATPA_LEPTE4.255e-7590.85ATP synthase subunit alpha, chloroplastic OS=Lepto... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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