CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 78/136 (57.35%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAALNIVPTST                LNGIALRVPTPN         + K    AE+VN AFR++A   LKG+L VCD PLVSVDFRC             VMG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  286 AAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.935e-31
Identity = 71/136 (52.21%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            +AALNIVPT+T                LNGIALRVPTPN         VSKKTF EEVN A  ++A+  +KGI+   DEPLVS D+R              VMGDDM+KV+AWYDNEWGYSQRVVDL +++A+ WK
Sbjct:  281 SAALNIVPTTTGAAKAVALVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLGEVMASQWK 416          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.495e-30
Identity = 74/136 (54.41%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAA+NIVPTST                LNGIALRVPTPN         V K T AE+VN   +E+A+  LKG+L   D  LVS DFR              VMG DMVKVIAWYDNEWGYSQRVVDLA+IVA NWK
Sbjct:  202 AAAVNIVPTSTGAAKAVALVIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVAKNWK 337          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 69/136 (50.74%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            +AALNIVPT+T                LNGIALRVPTPN         V+KKTF EEVN A  ++++  +KGI+   DEPLVS D R              VMGDDM+KV+AWYDNEWGYSQRVVDL +++A  WK
Sbjct:  279 SAALNIVPTTTGAAKAVALVVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGEVMARQWK 414          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 66/119 (55.46%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  237 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWG 593
            AAALNIVPT+T                LNGIALRVPTPN         V KKTFAEE+N AF+E+A   L G+L+V DEPLVSVDFRC             VMG DMVKV+AWYDNEWG
Sbjct:  196 AAALNIVPTTTGAAKAVALVLPKLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.309e-26
Identity = 64/135 (47.41%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAA+NIVPTST                LNG+ALRVPTPN         V K+T  EEVN A +++++  LKGIL   +  LVS D++              VMG+D+VKV+AWYDNEWGYSQRV+DLA++VA  W
Sbjct:  202 AAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.309e-26
Identity = 64/135 (47.41%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAA+NIVPTST                LNG+ALRVPTPN         V K+T  EEVN A +++++  LKGIL   +  LVS D++              VMG+D+VKV+AWYDNEWGYSQRV+DLA++VA  W
Sbjct:  202 AAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.712e-21
Identity = 61/132 (46.21%), Postives = 75/132 (56.82%), Query Frame = -3
Query:  198 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 593
            AAA NI+PTST                LNG A+RVPTPN         ++++  AEEVNAA +E+A+ +LKGIL   +EPLVS D+               VM   MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  200 AAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = -3
Query:  198 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 593
            AAA NI+PTST                LNG A+RVPTPN         + K+   E+VN A +E+A+ +LKGIL   +EPLVS D+               VM  +MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  200 AAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.449e-20
Identity = 58/128 (45.31%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  210 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLA 593
            AAA N++PTST                LNG A+RVPT N         + K+   EEVNAAF+ +A+ ELKGIL   +EPLVS+D+               VM  +MVKV++WYDNE GYS RVVDLA
Sbjct:  199 AAAENMIPTSTGAAKAVALVLPELKGKLNGGAVRVPTANVSLVDLVVELDKEVTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLA 326          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3PB_SPIOL1.264e-3257.35Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_GRAVE6.935e-3152.21Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY34.495e-3054.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_CHOCR7.668e-3050.74Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA7.935e-2755.46Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_ANAVT2.309e-2647.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP2.309e-2647.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_BACSU1.712e-2146.21Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_BACME1.110e-2044.70Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACCE1.449e-2045.31Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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