CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 57/133 (42.86%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  195 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 593
            AAA +I+PT+T                LNG+A+RVPTPN         + K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+               V+   MVKV++WYDNE GYS RVVDLA  +A+
Sbjct:  200 AAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.090e-19
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = -3
Query:  192 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 593
            AAALNIVPTST                L+G ALRVP P          +S +   +E+NAAF+ +A+  LKGIL   D P+VS D                V+ DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  206 AAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.090e-19
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = -3
Query:  192 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 593
            AAALNIVPTST                L+G ALRVP P          +S +   +E+NAAF+ +A+  LKGIL   D P+VS D                V+ DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  206 AAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = -3
Query:  201 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 593
            AAA+NI+PT+T                L+G+A+RVPTP+         V K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                V+G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  200 AAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 55/136 (40.44%), Postives = 67/136 (49.26%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            A   +I+PT+T                L+G+ALRVP PN         +     AEEVN AF+ +A   + G+L   DEPLVS D+               VM D  VKV+AWYDNEWGYS RVVDL   VA   K
Sbjct:  200 ACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.947e-18
Identity = 54/134 (40.30%), Postives = 69/134 (51.49%), Query Frame = -3
Query:  192 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 593
            AAALNIVPTST                L+G ALRVP P          + K    E++NAAF+ +A+  LKGIL   D P+VS D                V+ D+  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  206 AAALNIVPTSTGAAKAIGLVMPNLKGKLDGYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  207 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLAD 581
            +I+PTST                L+G+ALRVPT N         + K+  AEEVN AF  +    L+GI+ V  +PLVSVDF               VM  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  205 SIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  207 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLAD 581
            +I+PTST                L+G+ALRVPT N         + K+  AEEVN AF  +    L+GI+ V  +PLVSVDF               VM  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  205 SIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  207 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLAD 581
            +I+PTST                L+G+ALRVPT N         + K+  AEEVN AF  +    L+GI+ V  +PLVSVDF               VM  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  205 SIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  207 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLAD 581
            +I+PTST                L+G+ALRVPT N         + K+  AEEVN AF  +    L+GI+ V  +PLVSVDF               VM  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  205 SIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3P_BACST1.893e-2042.86Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_MYCTU6.090e-1941.04Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO6.090e-1941.04Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_THEMA1.772e-1839.69Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P2_BACSU1.772e-1840.44Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCAV3.947e-1840.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_STAAW1.500e-1743.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS1.500e-1743.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR1.500e-1743.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN1.500e-1743.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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