CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 39/123 (31.71%), Postives = 58/123 (47.15%), Query Frame = -3
Query:  213 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 581
            NI+P ST                L G+A RVPTP+         +++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  277 NIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 399          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 41/126 (32.54%), Postives = 58/126 (46.03%), Query Frame = -3
Query:  216 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVD 593
            AA+ +I+P  T                   IA+RVPT N         V KK    +VN A + ++   L GIL   +EPLVSVDF               V   ++VK++ W DNEWG++ R++D
Sbjct:  202 AASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 41/126 (32.54%), Postives = 58/126 (46.03%), Query Frame = -3
Query:  216 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVD 593
            AA+ +I+P  T                   IA+RVPT N         V KK    +VN A + ++   L GIL   +EPLVSVDF               V   ++VK++ W DNEWG++ R++D
Sbjct:  202 AASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 40/116 (34.48%), Postives = 53/116 (45.69%), Query Frame = -3
Query:  243 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNE 590
            AA NI+P +T                L G+A RVPTPN         + K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE
Sbjct:  189 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = -3
Query:  198 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNEL----KGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 581
            NI+P ST                L G+A RVPT +         + K+T  ++V  A R++AD +     KGI+   +E +VS DF                +    +K++AWYDNEWGY++RV D    VA
Sbjct:  203 NIIPASTGAAKAVTKAIPDLEGKLTGLAFRVPTLDVSVVDLVVRLEKETSYDDVKKAMRDAADGKHPGIEKGIVDYTEEDVVSTDFVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVA 334          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 40/128 (31.25%), Postives = 56/128 (43.75%), Query Frame = -3
Query:  210 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLA 593
            AA+ +I+P  T                   I++RVPT N         +  +     VNAA + +AD    GIL   DEPLVS DF               V    +VK++ W DNEWG++ R++D A
Sbjct:  202 AASQSIIPVDTKLARGIERILPQMKDKFEAISVRVPTINVTAIDLSVTLDTRVDIATVNAALKAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFANRMLDTA 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 37/126 (29.37%), Postives = 56/126 (44.44%), Query Frame = -3
Query:  216 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVD 593
            AA  +I+P  T                   I++RVPT N         + KK   E++N+  + +++    GIL   DEPLVS DF               V    +VK++ W DNEWG++ R++D
Sbjct:  202 AAGQSIIPVDTKLARGIERILPHMKDKFEAISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLD 327          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3PT_HUMAN3.578e-1131.71Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
E4PD_AERS43.578e-1132.54D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH3.578e-1132.54D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P2_DROSU4.674e-1134.48Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P1_AGABI6.104e-1131.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
E4PD_SHEAM6.104e-1131.25D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEFN7.972e-1129.37D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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