CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 50/134 (37.31%), Postives = 69/134 (51.49%), Query Frame = -3
Query:  195 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 593
            AAA NI+PT+T                L+GIA+RVP P          + ++   +EVNAAF+++AD+ +LKGIL   ++ +VS D                V     VK++ WYDNEWGYS R+VDL   V N
Sbjct:  201 AAAENIIPTTTGAAKATALVLPQLKGKLDGIAMRVPVPTGSATDLVVELQREVTKDEVNAAFKKAADDGDLKGILFYTEDAIVSSDITGDPASCTFDSSLTMVQEGKSVKILGWYDNEWGYSNRLVDLTVFVGN 334          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G+A RVPT +         ++K+   +E+ AA +E ++ +LKGIL   +E +VS DF                +    VK++AWYDNEWGYS RVVDL
Sbjct:  203 AASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDL 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 50/124 (40.32%), Postives = 65/124 (52.42%), Query Frame = -3
Query:  210 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLA 581
            +I+PTST                L+G+ALRVPT N         + +     +VN AF+ +   +L G+L V + PLVSVDF               VMG + VKVIAWYDNEWGYS RVV++A
Sbjct:  205 SIIPTSTGAAKALKEVLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVA 325          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                L G+A+RVPT N           K    +++ AA + +++ ELKGIL   ++ LVS D                 + D  VK+I+WYDNEWGYS+RV+DL   +A
Sbjct:  202 AAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIA 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = -3
Query:  198 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 581
            NI+P+ST                L G+A RVPT +         + K     E+NAA +E+++ ELKGIL   ++ +VS DFR               +  +  KV++WYDNEWGYS +V ++A ++A
Sbjct:  204 NIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G+A RVPT +         + KK    ++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  204 AASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDL 330          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = -3
Query:  213 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 590
            A  NI+P+ST                L G+A RVPTP+         + K    +E+ AA +  ++  LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  207 AGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDL 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  198 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 581
            NI+P+ST                L G+A RVPT +         + K T  E++  A +E+++ E+KG+L+  DE +VS DF               ++    VK++AWYDNEWGYS RVVDLA  VA
Sbjct:  207 NIIPSSTGAAKAVGKVLPELKGKLTGMAFRVPTNDVSVVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVA 334          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = -3
Query:  213 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 590
            AA NI+P +T                L G+A RVPTPN         + K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  199 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 47/126 (37.30%), Postives = 61/126 (48.41%), Query Frame = -3
Query:  213 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 590
            A  NI+P ST                L G+A RVPTPN         + K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  199 ACQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3P_STRCO6.302e-1637.31Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PC_CRAPL6.302e-1636.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAES6.302e-1640.32Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_PARBA8.231e-1635.11Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_BACFR8.231e-1633.59Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PC_RANAC8.231e-1635.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY1.075e-1534.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CHLRE1.075e-1536.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROPS1.075e-1537.30Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_DROHY1.404e-1537.30Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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