CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                L G+A+RVPT N           K    +++  A +++++NELKGIL   ++ +VS D                 +  + +K+++WYDNEWGYS+RVVDL   ++
Sbjct:  201 AATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYIS 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G++ RVPT +         + K    E+V AA +E ++ +LKGIL   ++ +VS DF                + D+ +K+++WYDNEWGYS RVVDL
Sbjct:  203 AASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  210 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLA 590
            A+ +++PTST                L+GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF               V+   + +V+AWYDNEWG+S R+VD A
Sbjct:  203 ASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTA 330          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 49/134 (36.57%), Postives = 63/134 (47.01%), Query Frame = -3
Query:  192 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 593
            AAALNIVPTS+                L+  ALRVP P            + T  EEV  A+  +A    KG+LS  D PLVS D                 +    VKV+ WYDNEWGYS R++DLA ++ ++
Sbjct:  201 AAALNIVPTSSGAAKAIGLVLPELAGRLDAFALRVPVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDI--VGDPASLFDAGLTRVCGPQVKVVGWYDNEWGYSNRLIDLATLIGSS 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                L G+++RVPT N         + K    E++  A +++AD  LKG+L+  ++ +VS D                 + D  VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  201 AAQNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPTSNVSVVDLTVRIEKGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                L G+++RVPTPN         + K    +E+ A  +E+A+  L GIL   ++ +VS D                 +  + VK+IAWYDNEWGYS+RV+DL   VA
Sbjct:  201 AAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTPNVSVVDLTVRIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G++ RVPT +         + K    +E+ AA +  A+  LKGIL   +E LVS DF+               +  + VK+++WYDNEWGYS RVVDL
Sbjct:  203 AASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = -3
Query:  192 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 590
            A+ NI+P+ST                L G+A RVPT +         ++K+   +E+ A  +++++NELKGIL   ++ +VS DF                +    VK++ WYDNE+GYS RVVDL ++VA N
Sbjct:  199 ASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAKN 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = -3
Query:  213 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 590
            A  NI+P+ST                L G+A RVPTP+         + K    EE+ A  +++++NELKGIL   ++ +VS DF                + D  VK+++WYDNE+GYS RV+DL
Sbjct:  201 AGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDL 326          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = -3
Query:  198 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 593
            AAA NI+P+ST                L G+A RVPT N         + K    +E+ A  + +++NELKGIL   ++ +VS DF                + ++ VK+++WYDNEWGYS R +DL   +A
Sbjct:  201 AAAANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMA 332          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3P_EMENI1.834e-1532.06Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PC_DIACA1.834e-1534.65Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ZYMMO2.395e-1535.16Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_STRAE2.395e-1536.57Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CRYPA2.395e-1533.59Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_CLAPU2.395e-1535.11Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3PE_MAIZE2.395e-1535.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA2.395e-1533.83Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P2_RHIRA3.128e-1534.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_USTMA4.085e-1534.09Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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