CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                + G++ RVP+ N         + K    EE+ +A +++AD ELKGI++   + +VS D                 +  + VK+++WYDNEWGYS+RV+DL + VA
Sbjct:  201 AAQNIIPSSTGAAKAVGKVIPAMNGKITGMSFRVPSANVSVIDLTVRLEKAASYEEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  195 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 590
            AA NI+P ST                L G+A RVPTPN         + K    +++    +++A+  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = -3
Query:  192 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 590
            A+ NI+P+ST                L G+A RVPT +         ++K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  199 ASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = -3
Query:  195 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 590
            A+ NI+P+ST                L G+A RVPTP+         ++K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS RVVDL    A+
Sbjct:  202 ASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTAS 333          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = -3
Query:  192 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 590
            A+ NI+P+ST                L G+A RVPT +         ++K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  199 ASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            A+ NI+P+ST                L G+A RVPTP+         ++K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS+RVVDL    A
Sbjct:  202 ASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = -3
Query:  192 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 590
            A  NI+P+ST                L G++ RVPT +         +      +E+ AA + +++NE+KGIL   ++ +VS DF                + DD VK+++WYDNEWGYS RV+DL + +  N
Sbjct:  199 ACFNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKN 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = -3
Query:  198 NIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 581
            NI+P+ST                L G++ RVPT +         + K+   +E+ AA +E+    LKGIL   ++ LVS DF                +  + VK+IAWYDNEWGYS+RVVDL   VA
Sbjct:  204 NIIPSSTGAAKAVGKVIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  195 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 590
            AA NI+P ST                L G+A RVPTPN         + K    E++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMAS 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  195 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 590
            A  NI+P ST                L G+A RVPTP+         + K    +E+ AA +E+A+  +KGIL   ++ +VS DF                +  + VK+IAWYDNE+GYS RVVDL   +A+
Sbjct:  207 AGQNIIPASTGAAKAVGKVIPGLNGKLTGMANRVPTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIAS 338          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3P_TRIAT4.085e-1532.82Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_RAT4.085e-1534.09Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P3_KLUMA4.085e-1533.08Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_SCHPO4.085e-1532.58Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLUMA4.085e-1533.08Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_SCHPO4.085e-1532.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PHYIN5.335e-1532.33Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_OMPOL5.335e-1535.94Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CRIGR5.335e-1534.09Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_BRUMA5.335e-1534.85Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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