CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA  NI+P+ST                L G+  RVPT +         + K     E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  206 AAGFNIIPSSTGAAKAVGKVLPVLNGKLTGMCFRVPTQDVSVVDLTVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 48/132 (36.36%), Postives = 63/132 (47.73%), Query Frame = -3
Query:  198 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 593
            AA+ NI+P+ST                L G+A RVPT +         ++K    EE+ A  +  A+ ++KG L   DEPLVS DF                +    VK++AWYDNEWGYS RV DL   VA
Sbjct:  247 AASGNIIPSSTGAAKAVAKVIPAVKGKLTGMAFRVPTIDVSVVDLTCRLAKDATYEEICAEVKRRANGDMKGFLGYTDEPLVSTDFETEPISSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVA 378          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 48/127 (37.80%), Postives = 62/127 (48.82%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AAA NI+P+ST                L G++ RVPT N         +      EE+  A RE+A+ ELKG+L   DE +VS DF                +    VK+++WYDNEWGYS RVVDL
Sbjct:  205 AAAGNIIPSSTGAAKAVTAVIPELKGRLTGMSFRVPTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDL 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = -3
Query:  198 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 590
            AA NI+P+ST                L G+++RVPT N           K    +++    +++++ ELKGIL   ++ LVS D                 + D  +K+I+WYDNEWGYS+RVVDL   +A
Sbjct:  201 AAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTANVSVVDLTCKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIA 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = -3
Query:  201 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 593
            AA  NI+P+ST                L G+A RVPT +         + K    EE+ A  +  ++ +LKGIL   +E +VS DF                + +  VK+++WYDNEWGYS RV+DL  IV
Sbjct:  205 AAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIV 335          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 46/126 (36.51%), Postives = 60/126 (47.62%), Query Frame = -3
Query:  213 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 590
            AA NI+P +T                L G+A RVPTPN         + K    +E+ A   E++   LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  199 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  195 AALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 590
            AA NI+P ST                L G+A RVPTPN         + K    +++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  200 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G++ RVPT +         + K+   E++ AA +E ++ ++KGIL   ++ +VS DF                +  + VK+++WYDNEWGYS RVVDL
Sbjct:  203 AASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDL 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            AA+ NI+P+ST                L G++ RVPT +         + K    EE+  A + +++  LKGI+   +E LVS DF                + D  +K+++WYDNEWGYS RVVDL
Sbjct:  203 AASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDL 329          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = -3
Query:  213 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDL 593
            +AA NI+P++T                L G+A RVPT +         + K    + +  A +E+++ ++KGIL   ++ +VS DF                + D  VK++AWYDNEWGYS RVVDL
Sbjct:  205 SAATNIIPSATGAAKAVGKVLPELNGKLTGMAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDL 331          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3PC_TAXBA5.335e-1533.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PA_GUITH5.335e-1536.36Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_MASBA6.968e-1537.80Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_AJECA6.968e-1532.82Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PC_MAGLI6.968e-1534.35Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_DROME6.968e-1536.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_MOUSE9.100e-1533.33Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_ATRNU9.100e-1533.07Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PD_MAIZE9.100e-1533.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA9.100e-1533.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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