CX287440

Overview
NameCX287440
Unique NameCX287440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:82..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 55/208 (26.44%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   24 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            A+  +++ VKA+     + G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V
Sbjct:    2 AETKLQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGV 202          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 3
Query:   87 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 527
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +    ++E YPE  L   +P E A       + SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 46/158 (29.11%), Postives = 81/158 (51.27%), Query Frame = 3
Query:   87 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 527
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +    ++E YP   L   +P E A       + SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of CX287440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CLIC3_HUMAN1.144e-1126.44Chloride intracellular channel protein 3 OS=Homo s... [more]
GSTO1_RAT2.549e-1129.75Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG2.549e-1129.11Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionC01009E12SK Veg1 Citrus clementina cDNA clone C01009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287440 ID=CX287440; Name=CX287440; organism=Citrus clementina; type=EST; length=577bp
ACTCTCTCTGATCACTCAATTCCGCAAAAATGGCCGTGGAGATTTGTGTG
AAAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGACTGCCCATTTTCCCA
AAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCATACAAGCGTCACC
TCATCAATATCAGTGACAAGCCTCAATGGTTTTTGGAGATAAGCCCAGAA
GGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGGTGGCTGACTCTGA
TGTGATTGTTAGAATTATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTA
ATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATATTCCCATCTTTTGTC
AATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAGAGCAAGCTTTGCT
GGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACTCATGGAGGTCCAT
TCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAAG
CTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCCC
TGAGAGCTTGGCTCATGTCCATGGGTA
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