CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+R+ENK   QVTF+KRR+GL+KKA ELSVLCD ++AL++FS+RG+LYEFCS  S+   LERYQ
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 45/71 (63.38%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ ++   L+RYQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIE K   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGY-------SSLQLLKIVQRQLEG 354
            MGR K+ LQRIENK   QVTF+KRR+GL+KKA ELS+LCD ++ALV+FS  GRLY+F S+ ++   LERYQ  I     A+ AP +++ Q  Y       + +++L+  QR L G
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAA-APTSDEMQNNYQEYVNLKAHVEILQQSQRNLLG 114          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADS-LASILERYQSRITEEAVASGAPKAEDPQAGY-------SSLQLLKIVQRQLEGPNFEQFTAADXXXXXXXXXXXXXXIRAVKVHSYAHWASLVQTQ 483
            MGR K++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S +A  +++Y+      A       A+D Q  Y       S +++L+  QR L G    +    +              IR+ K  S     S ++T+
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKH--SYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTK 157          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 44/71 (61.97%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD +++L++FS+RG+LYEFCS  ++   LERYQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQLEGPNFEQFTAADXXXXXXXXXXXXXXIRAVKVHSYAHWASLVQTQLMMGSIRT 507
            MGRKK++++RIENKS  QVTFSKRR+GLI+KAR+LS+LC+  +A+++ S  G+LY+  S D+++ I++RY+    +E  A     AE  +      +LL+IVQ +LE  N +  +                  RA K            T+LMMG +++
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEA--LDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARK------------TELMMGEVKS 145          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS----RITEEAVASGAPKAEDPQAGYS-SLQLLKIVQRQLEGPNFEQFT 375
            M R + +L+RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++AL++FS RGRLYEF SA SL   ++RY++     +  + +     + +D   G +  L+ L   +R++ G N E F+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFS 120          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGY---------SSLQLLKIVQRQLEGPNFEQFTAAD 384
            MGR K++++RIENK+  QVTF KRR+GL+KKA EL++LCD ++AL++FSSRGRLYEF + +S  S +ERY+      + +  AP  +     Y           +Q L+   R L G +    TA +
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK--ASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKE 125          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGY--------SSLQLLKIVQRQLEGPNFE 366
            MGR K+QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++AL+IFS++G+LYE+ +   +  ILERY+     E V   A    D Q  +        + ++ ++  Q+ L G + E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISA--ESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLE 118          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MTF1_PEA1.595e-2063.38MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP1_ARATH3.552e-2063.38Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
AGL9_SOLLC3.552e-2064.79Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD34_ORYSJ4.639e-2048.70MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL3_ARATH4.639e-2038.99Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
SEP2_ARATH6.059e-2061.97Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL31_ARATH6.059e-2037.11Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD56_ORYSJ7.913e-2044.17MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD21_ORYSJ1.350e-1941.73MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD14_ORYSJ1.350e-1945.00MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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