CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILE----------RYQSRITEEAVASGAPKAEDPQA 303
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L+          R  S I E     G    E P A
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDA 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILE----------RYQSRITEEAVASGAPKAEDPQA 303
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L+          R  S I E     G    E P A
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDA 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQL 348
            M R K+Q++RIEN++  QVT+SKRR+GL KKA EL+VLCD  +++++ SS G+L+EF S   +   + + YQ  +  +   S   K ++       L+ LK V R L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQE------QLRKLKEVNRNL 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASIL------ERYQSRITEEAVASGAPK------AEDPQAGY 309
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L      E ++SR   + V +   K      + DP   Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSY 105          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASIL------ERYQSRITEEAVASGAPK------AEDPQAGY 309
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L      E ++SR   + V +   K      + DP   Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSY 105          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASIL------ERYQSRITEEAVASGAPK------AEDPQAGY 309
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L      E ++SR   + V +   K      + DP   Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSY 105          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD-MDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2A_MOUSE2.466e-1342.57Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK2.466e-1342.57Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MADS1_PETHY2.466e-1340.19Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MEF2A_RAT3.220e-1340.95Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_HUMAN3.220e-1340.95Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN3.220e-1340.95Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2C_PONAB4.206e-1351.43Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE4.206e-1351.43Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.206e-1351.43Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN4.206e-1351.43Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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