CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.493e-13
Identity = 33/70 (47.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K+ +++I N+   Q TF+KR++GLIKKA ELS+LCD ++A+++FSS  +L+++ S D +  +L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRD-MDKLLIRY 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 35/73 (47.95%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLA-SILERYQS 246
            M R K+Q++RIEN++  QVT+SKRR+GL KKA EL+VLCD  +++++FSS  +L+E+ S ++    I++ YQ+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQT 73          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERYQ 243
            MGR KL++++IENK+  QVTFSKRR+G++KKA+EL+VLCD  ++L++ SS  +L+ + S   SL  + + YQ
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQ 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERYQSRITEEAVASGAPKAED 294
            M R K+Q++RIEN++  QVT+SKRR+GL KKA ELSVLCD  +++++ SS  +L+E+ S   +   + ++YQ  +  +  +S   K ++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQE 89          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS 246
            MGR+K+++QRI +     VTF KR++GL KKA ELSVLC VD+A++I  S    YEF S D+   ++  YQ+
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSSVDT-NDLIYHYQN 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SMP1_YEAST (Transcription factor SMP1 OS=Saccharomyces cerevisiae GN=SMP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS 246
            MGR+K++++ I++     VTF KR++GL KKA ELSVLC VD+A++I  S    YE+ S D ++++L  +Q+
Sbjct:    1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYSSVD-MSNLLNVHQN 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSR----ITEEAVASGAPKA 288
            + +GR+K+ + +I+ +S  QVTFSKRR+GL KKA EL  LC  ++ +++FS   + + F    S+ S+L+RY SR    + +     G+P A
Sbjct:   60 ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF-GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAA 150          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2A_XENLA4.206e-1351.43Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PIG4.206e-1351.43Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
SRFC_DICDI5.493e-1347.14Serum factor response C OS=Dictyostelium discoideu... [more]
AP3_ARATH7.174e-1347.95Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA1.224e-1250.00MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
DEFA_ANTMA1.598e-1240.45Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
RLM1_YEAST3.560e-1248.61Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
SMP1_YEAST6.715e-1144.44Transcription factor SMP1 OS=Saccharomyces cerevis... [more]
AGL61_ARATH8.770e-1138.04Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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