CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS 246
            MGR K++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RGRL+EF ++  +   LERY+S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRS 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS 246
            MGR K++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RGRL+EF ++  +   LERY+S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRS 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ALVIFSS+G+L+E+ +   +  ILERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERY 70          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSA-DSLASILERYQ----SRITE 258
            MGR K++++RIEN +  QVTFSKRR GL+KKA ELSVLCD +L L+IFSS G+L+E+ SA  S+  I+ERYQ    +RITE
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITE 81          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+ IENK   QVTF+KRR  L+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LE+YQ
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS-RITEEAVASGAPKAE 291
            MGR K+QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD ++A ++FS +G+LYE+ +   +  ILERY+     E+A+ S   ++E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESE 88          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGY--------SSLQLLKIVQRQLEGPNFE 366
            MGR K+QL+RIEN    QVTFSKRRSGL+KKA E+SVLCD ++AL+IFS++G+LY++ +   +  ILERY+     E V   A    D Q  +        + ++ ++  Q+ L G + E
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISA--ESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLE 118          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++AL++FSS+G+L+E+ +   +  ILERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERY 70          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEA-VASGAPKAEDPQAGYSSL----QLLKIVQRQLEGPNFEQFTAAD 384
            MGR K+ ++RI+N    QVTFSKRR GL+KKAREL++LCD D+ L++FS  GRLY+F S+ S+ SI+ERYQ    E   + +   +A+  Q   ++L    Q L    RQL G     FT  D
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRD 122          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 44/88 (50.00%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKA 288
            +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FS+RGRLYE+ + +S+   +ERY+   T+    S   +A
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN-NSVKGTIERYKKACTDSPNTSSVSEA 101          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS5_ORYSJ8.749e-1962.50MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI8.749e-1962.50MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL8_SINAL8.749e-1964.29Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
GGM13_GNEGN1.143e-1860.49MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL9_ARADE1.143e-1861.97Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MAD15_ORYSJ1.492e-1852.27MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD14_ORYSI1.949e-1843.33MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_ARATH1.949e-1861.43Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MAD25_ORYSJ2.546e-1845.53MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AG_PANGI3.325e-1850.00Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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