CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYS--------SLQLLKIVQRQLEGPNFEQFTAAD 384
            MGR +++L+RIENK   QVTFSKRR+GL+KKA+E+SVLCD +++L++FS +G+L+E+ S   +  +LERY+     E          + Q  +S         ++LL+  QR   G   E  +  D
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKD 126          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEA 264
            +K GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ S +S+   +ERY+  I++ +
Sbjct:   15 RKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAISDNS 93          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEA 264
            +K GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ S +S+   +ERY+  I++ +
Sbjct:   15 RKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAISDNS 93          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGY---------SSLQLLKIVQRQLEGPNFEQFTAADXXXXXXXXXXXXXXIRAVK 441
            MGR +++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ + +++ + ++RY+ +       SGAP  E     Y           +Q+L+   + L G N    +  +              IRA K
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYK-KAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARK 145          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR ++QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD ++ALV+FS +G+L+E+ +   +  ILERY+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYE 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR ++QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD ++ALV+FS +G+L+E+ +   +  ILERY+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYE 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ L++FS++G+L+E+ +   +  ILERY+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYE 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 SQSRAALGQKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQL 348
            S   A   +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++ALVIFS+RGRLYE+ + +S+   +ERY+   ++   A   P   +    Y   +  K+ +RQ+
Sbjct:    6 SSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN-NSVRGTIERYKKACSD---AVNPPSVTEANTQYYQQEASKL-RRQI 116          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 42/80 (52.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEA 264
            +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ + +S+ + +ERY+   ++ +
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVKATIERYKKACSDSS 93          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 42/80 (52.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEA 264
            +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ + +S+ + +ERY+   ++ +
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVKATIERYKKACSDSS 93          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
CAL_ARATH4.342e-1838.89Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AG_BRANA4.342e-1855.00Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH4.342e-1855.00Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD13_ORYSJ5.671e-1836.99MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AP1_SINAL5.671e-1859.15Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH5.671e-1859.15Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC5.671e-1857.75Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL1_ARATH5.671e-1843.97Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_TOBAC7.407e-1852.50Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY7.407e-1852.50Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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