CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 43/88 (48.86%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   25 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKA 288
            +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++ALV+FS+RGRLYE+ + +S+ + +ERY+   ++ +      +A
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYAN-NSVKATIERYKKACSDSSNTGSVSEA 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ L++FS++G+L+E+ +   +  +LERY+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYE 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ L++FS++G+L+E+ +   +  +LERY+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYE 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            M R+K+Q+++I+N +  QVTFSKRR GL KKA ELSVLCD D+AL+IFSS G+L+EFCS+ S+  +LER+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS-SMKEVLERH 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERY 240
            MGR K++++RIENK+  QVTFSKRR+GL+KK  ELSVLCD  + L+IFSS+G+L+E+CS   S++ I+ RY
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRY 74          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR +++++RIENK   QVTFSKRR+GL+KKA ELSVLCD ++AL+IFSSRG+LYEF S   + S +ERY
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV-GIESTIERY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 45/86 (52.33%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 SQSRAALGQKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITE 258
            S   A   +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++ALVIFS+RGRLYE+ + +S+   +ERY+   ++
Sbjct:    6 SNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN-NSVRGTIERYKKACSD 90          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 45/104 (43.27%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQR 342
            MGR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FS+RGRLYE+ + +++ S +ERY+   ++   ++     ++  A Y   +  K+ Q+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN-NNIRSTIERYKKACSD---STNTSTVQEINAAYYQQESAKLRQQ 100          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 43/71 (60.56%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ + +S+ S +ERY+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVKSTVERYK 70          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSL--QLLKIVQR--QLEGPNFEQFT 375
            MGR K++++RIEN +  QVTFSKRRSGL+KKARELSVLCD ++A+++FS  G+L+E+ S+  +   L RY +       +S A KAE+  A    L  QL K+ ++  QL+G      T
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYGNH-----QSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLT 113          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AG_SOLLC9.674e-1848.86Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL8_SOLTU9.674e-1856.34Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO9.674e-1856.34Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
SVP_ARATH1.263e-1761.43MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
FBP24_PETHY1.263e-1759.15MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
AGL6_ARATH1.263e-1764.29Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL5_ARATH1.263e-1752.33Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL11_ARATH1.263e-1743.27Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MADS3_ORYSJ1.650e-1760.56MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL15_ARATH1.650e-1745.38Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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