CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGA 279
            M R K+Q++RIEN    QVTF KRR GL+KKARELSVLCD D+ ++IFSS+G+L+E  +  ++ +++ERYQS +    +  GA
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGA 83          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K++++RI+N +  QVTFSKRRSGL KKARELS+LCD ++ L++FSS  RLY+F S+ S+ SI+ERY
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS-SMKSIIERY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   25 QKMG-RKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVAS 273
            +K+G R K++++RIEN +  QVTF KRRSGL+KKA ELSVLCD ++ALV+FSSRGRLYE+ S +S+   +ERY+   ++ + AS
Sbjct:   40 EKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNAS 122          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAE------DPQAGYSSLQLLKIVQRQLEGPNFEQ 369
            M R K Q++RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++AL++FS RG+LYEF SA S    +ERY++  T+E + +   + +      D       L+ L+  +R+L G   ++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA-STQKTIERYRT-YTKENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDE 117          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 43/88 (48.86%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY-QSRITEEAVASGAPKAE 291
            MGR K+ +QRI++ +  QVTFSKRR GLIKKA+EL++LCD ++ L+IFSS G+LY+F S+ S+ S+++RY +S+I ++ + + A + +
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS-SMKSVIDRYNKSKIEQQQLLNPASEVK 87          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 43/82 (52.44%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY-QSRITEEAVAS 273
            MGR K+ ++RI+N +  QVTFSKRR+G+ KKA+EL++LCD ++ L+IFSS GRLYE+ S+ S+ S+++RY +S+  ++AVA+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGKSKDEQQAVAN 81          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERYQ 243
            MGR K++++RIEN +  QVTFSKRR GL+KKA EL+VLCD  + +VIFSS G+++E+CS A SL  ++E+YQ
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQ 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGA 279
            MGR K+ ++RI+N +  QVTFSKRR+GL+KKA+ELS+LCD ++ LV+FSS GRLYEF S+ ++ ++++RY +   EE +   A
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRY-TNAKEELLGGNA 81          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.070e-16
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERYQSRI 252
            MGR K++++RIEN +  QVT+SKRR+G++KKAREL+VLCD  +A+++FSS G+ +EFCS +  +  I +RYQ  I
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAI 75          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERYQS 246
            MGR K++++RIEN +  QVTFSKRR GL+KKA EL+VLCD  + +VIFSS G+++E+CS   SL  ++E YQ+
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQT 73          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD33_ORYSJ2.155e-1751.81MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD23_ORYSJ2.155e-1761.43MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD58_ORYSJ3.676e-1755.95MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD50_ORYSJ4.801e-1743.70MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL21_ARATH4.801e-1748.86Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD27_ORYSJ6.270e-1752.44MADS-box transcription factor 27 OS=Oryza sativa s... [more]
M17_MAIZE6.270e-1758.33MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD57_ORYSJ8.189e-1751.81MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD16_ORYSJ1.070e-1653.33MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD29_ORYSJ1.824e-1656.16MADS-box transcription factor 29 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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