CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSA-DSLASILERYQ--------SRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQLEGPNFEQFTAAD 384
            MGR K+Q++RIEN+   QVTFSKRR GL+KKA E++VLCDVD+A ++FS++G L+ + S+  ++  ILE+Y         + + EE        + D       ++ LK  QR L G   +  T  D
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQD 127          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERY--QSRITEEAVASGAPKAEDPQ 300
            MGR K++++RIEN +  QVTFSKRRSGL+KK  ELSVLCD  + L++FS++G+L E+C+   S+  I++RY     I  E      P A++ Q
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQ 93          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 38/71 (53.52%), Postives = 57/71 (80.28%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADS-LASILERY 240
            MGR K+++++IEN++  QVTFSKRR+GLIKK RELS+LCD  + L++FS+ G+L EFCS  + +  +++RY
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRY 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 50/108 (46.30%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQ-AGYSSLQLLKIVQRQLE 351
            M R K Q++RIEN +  QVTFSKRR+GL+KKA ELSVLCD +++L+IFS +G+LYEF S+ ++   ++RY  R T++ V++     E+ Q   Y +  ++K ++ QLE
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS-NMQDTIDRY-LRHTKDRVSTKPVSEENMQHLKYEAANMMKKIE-QLE 105          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 40/78 (51.28%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADS------LASILERYQS 246
            MGR K++++RIEN +  QVTFSKRR+G++KKARE+ VLCD ++ +VIFSS G+L ++C+  +      L+ ILE+YQ+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQT 78          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.933e-16
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILER 237
            M R+K+Q+++I+N +  QVTFSKRR GL KKA ELSVLCD D+AL+IFSS G+L+++ S+ S+  ILER
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILER 68          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.054e-16
Identity = 37/71 (52.11%), Postives = 59/71 (83.10%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERY 240
            MGR K++++RIEN S  QVT+SKRR+G++KKA+E+SVLCD  ++++IF+S G+++EFCS + +L  +L+ Y
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHY 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 37/72 (51.39%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS-ADSLASILERYQ 243
            MGR K++++RIEN S  QVT+SKRR+G+IKKA+E++VLCD  ++L+IF + G+++E+CS + +L  +L+ YQ
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQ 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 38/70 (54.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K++++RIEN S  QVT+SKRR+G++KKA+E+SVLCD  ++++IF+S G+++EF S+ SL  IL++Y
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 38/70 (54.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K++++RIEN S  QVT+SKRR+G++KKA+E+SVLCD  ++++IF+S G+++EF S+ SL  IL++Y
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQY 69          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD20_ORYSJ1.824e-1639.37MADS-box transcription factor 20 OS=Oryza sativa s... [more]
DEF21_ANTMA4.064e-1647.31MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
TT16_ARATH5.308e-1653.52Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
SOC1_ARATH5.308e-1646.30MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MADS4_ORYSJ5.308e-1651.28MADS-box transcription factor 4 OS=Oryza sativa su... [more]
JOIN_SOLLC6.933e-1659.42MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
GLOB_ANTMA9.054e-1652.11Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS2_PETHY1.544e-1551.39Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_TOBAC1.544e-1554.29Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.544e-1554.29Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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